Variant report

Variant	nsv971873
Chromosome Location	chr10:26850516-26870913
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:265)
CpG islands
(count:488)
Chromatin interactive
region (count:2)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:265 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr10:26860686-26860731	HepG2	liver:	n/a	n/a
2	ATF2	chr10:26863637-26864211	GM12878	blood:	n/a	n/a
3	ATF2	chr10:26863707-26864194	GM12878	blood:	n/a	n/a
4	ATF3	chr10:26863854-26863990	GM12878	blood:	n/a	n/a
5	BATF	chr10:26863751-26864136	GM12878	blood:	n/a	n/a
6	BATF	chr10:26863697-26864149	GM12878	blood:	n/a	n/a
7	BATF	chr10:26862524-26862900	GM12878	blood:	n/a	n/a
8	BATF	chr10:26862573-26862909	GM12878	blood:	n/a	n/a
9	BCL11A	chr10:26863793-26864021	GM12878	blood:	n/a	n/a
10	BCL11A	chr10:26862584-26862977	GM12878	blood:	n/a	n/a
11	BCL11A	chr10:26863648-26864087	GM12878	blood:	n/a	n/a
12	BCLAF1	chr10:26863786-26864104	GM12878	blood:	n/a	n/a
13	BCLAF1	chr10:26863717-26864158	GM12878	blood:	n/a	n/a
14	BHLHE40	chr10:26863731-26864167	GM12878	blood:	n/a	n/a
15	BHLHE40	chr10:26862634-26862906	GM12878	blood:	n/a	n/a
16	CEBPB	chr10:26851475-26851801	MCF-7	breast:	n/a	chr10:26851676-26851687
17	CEBPB	chr10:26860646-26861004	MCF-7	breast:	n/a	chr10:26860826-26860837
18	CEBPB	chr10:26860697-26860884	HepG2	liver:	n/a	chr10:26860826-26860837
19	CEBPB	chr10:26860641-26861006	HepG2	liver:	n/a	chr10:26860826-26860837
20	CEBPB	chr10:26851614-26851823	HepG2	liver:	n/a	chr10:26851676-26851687
21	CEBPB	chr10:26851528-26851835	H1-hESC	embryonic stem cell:	n/a	chr10:26851676-26851687
22	CEBPB	chr10:26860675-26860976	K562	blood:	n/a	chr10:26860826-26860837
23	CEBPB	chr10:26860662-26861015	A549	lung:	n/a	chr10:26860826-26860837
24	CEBPB	chr10:26860649-26861015	IMR90	lung:	n/a	chr10:26860826-26860837
25	CHD1	chr10:26862678-26862878	GM12878	blood:	n/a	n/a
26	CHD2	chr10:26862199-26862219	GM12878	blood:	n/a	n/a
27	CHD2	chr10:26862700-26862938	GM12878	blood:	n/a	n/a
28	CREB1	chr10:26863824-26864151	GM12878	blood:	n/a	n/a
29	CTCF	chr10:26862720-26862870	HAc	cerebellar:	n/a	n/a
30	CTCF	chr10:26862660-26862810	GM12865	blood:	n/a	n/a
31	CTCF	chr10:26862660-26862810	GM06990	blood:	n/a	n/a
32	CTCF	chr10:26862726-26862822	Pancreas_OC	pancreas:	n/a	n/a
33	CTCF	chr10:26862720-26862870	GM12873	blood:	n/a	n/a
34	CTCF	chr10:26862663-26862869	H1-hESC	embryonic stem cell:	n/a	n/a
35	CTCF	chr10:26857600-26857750	GM12868	blood:	n/a	n/a
36	CTCF	chr10:26862740-26862890	GM12868	blood:	n/a	n/a
37	CTCF	chr10:26862700-26862850	Hela-S3	cervix:	n/a	n/a
38	CTCF	chr10:26862720-26862870	HRE	kidney:	n/a	n/a
39	CTCF	chr10:26862743-26862918	H1-hESC	embryonic stem cell:	n/a	n/a
40	CTCF	chr10:26862720-26862870	HMF	breast:	n/a	n/a
41	CTCF	chr10:26862752-26862887	GM19239	blood:	n/a	n/a
42	CTCF	chr10:26862720-26862870	HepG2	liver:	n/a	n/a
43	CTCF	chr10:26868787-26868846	MCF-7	breast:	n/a	chr10:26868810-26868831 chr10:26868811-26868824 chr10:26868809-26868825 chr10:26868808-26868826
44	CTCF	chr10:26862740-26862890	HFF	foreskin:	n/a	n/a
45	CTCF	chr10:26862740-26862890	HFF-Myc	foreskin:	n/a	n/a
46	CTCF	chr10:26862800-26862950	HEEpiC	esophagus:	n/a	n/a
47	CTCF	chr10:26862740-26862890	HBMEC	blood vessel:	n/a	n/a
48	CTCF	chr10:26862743-26862900	MCF-7	breast:	n/a	n/a
49	CTCF	chr10:26862660-26862810	NHEK	skin:	n/a	n/a
50	CTCF	chr10:26862740-26862890	HRPEpiC	eye:	n/a	n/a

(count:488 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:26858394-26858444	LNCaP	prostate:	n/a
2	chr10:26856095-26856145	IMR90	lung:	fetal
3	chr10:26858394-26858444	PFSK-1	brain:	n/a
4	chr10:26856095-26856145	SK-N-SH	brain:	n/a
5	chr10:26856095-26856145	Hepatocyte	liver:	n/a
6	chr10:26856664-26856714	CMK	blood:	n/a
7	chr10:26856095-26856145	ECC-1	luminal epithelium:	n/a
8	chr10:26856664-26856714	RPTEC	kidney:	n/a
9	chr10:26856664-26856714	HRPEpiC	eye:	n/a
10	chr10:26856095-26856145	SKMC	muscle:	n/a
11	chr10:26856095-26856145	SK-N-MC	brain:	n/a
12	chr10:26855907-26855957	LNCaP	prostate:	n/a
13	chr10:26855907-26855957	GM12891	blood:	n/a
14	chr10:26856095-26856145	ovcar-3	ovarian:	n/a
15	chr10:26855907-26855957	CMK	blood:	n/a
16	chr10:26853625-26853675	U87	brain:	n/a
17	chr10:26858394-26858444	ProgFib	skin:	n/a
18	chr10:26855907-26855957	NH-A	brain:	n/a
19	chr10:26856454-26856504	LNCaP	prostate:	n/a
20	chr10:26853625-26853675	GM12891	blood:	n/a
21	chr10:26853625-26853675	HRPEpiC	eye:	n/a
22	chr10:26858394-26858444	HCF	heart:	n/a
23	chr10:26853625-26853675	AG04449	skin:	fetal
24	chr10:26856105-26856155	NHBE	bronchial:	n/a
25	chr10:26856128-26856178	HL-60	blood:	n/a
26	chr10:26856095-26856145	HepG2	liver:	n/a
27	chr10:26856128-26856178	AG04450	lung:	fetal
28	chr10:26856664-26856714	IMR90	lung:	fetal
29	chr10:26856664-26856714	ProgFib	skin:	n/a
30	chr10:26856664-26856714	HIPEpiC	eye:	n/a
31	chr10:26856664-26856714	MCF10A-Er-Src	breast:	n/a
32	chr10:26856095-26856145	K562	blood:	n/a
33	chr10:26853625-26853675	A549	lung:	n/a
34	chr10:26858394-26858444	SK-N-SH_RA	brain:	n/a
35	chr10:26856664-26856714	PANC-1	pancreas:	n/a
36	chr10:26853625-26853675	HCF	heart:	n/a
37	chr10:26856454-26856504	HepG2	liver:	n/a
38	chr10:26858394-26858444	PrEC	prostate:	n/a
39	chr10:26856105-26856155	SK-N-SH	brain:	n/a
40	chr10:26858394-26858444	BJ	skin:	n/a
41	chr10:26856664-26856714	ovcar-3	ovarian:	n/a
42	chr10:26856128-26856178	A549	lung:	n/a
43	chr10:26856664-26856714	SKMC	muscle:	n/a
44	chr10:26856128-26856178	SK-N-SH	brain:	n/a
45	chr10:26856128-26856178	SKMC	muscle:	n/a
46	chr10:26858394-26858444	HCM	heart:	n/a
47	chr10:26856128-26856178	NHBE	bronchial:	n/a
48	chr10:26856454-26856504	HCPEpiC	choroid plexus:	n/a
49	chr10:26856095-26856145	Jurkat	blood:	n/a
50	chr10:26856105-26856155	PFSK-1	brain:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26854569..26856089-chrX:118738967..118740548,2	MCF-7	breast:
2	chr10:26848889..26850459-chr10:26851524..26854140,2	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDSS1-7	chr10:26853755-26854138	NONHSAT011828
2	lnc-ABI1-4	chr10:26853755-26854134	ENSG00000246873
3	lnc-PDSS1-7	chr10:26854425-26855838	NONHSAT011828
4	lnc-ABI1-4	chr10:26854421-26855838	ENSG00000246873
5	lnc-ABI1-9	chr10:26859887-26860230	NONHSAT011829
6	lnc-PDSS1-1	chr10:26870673-26871754	NONHSAT011834

No data

Variant related genes	Relation type
APBB1IP	TF binding region
ENSG00000236894	TF binding region
APBB1IP	CpG island
ENSG00000236894	CpG island
ENSG00000186416	chromatin interactions
RAB11FIP5	miRNA target sites

Extended variants
information (count: 992 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:992 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs532280378	chr10:26850545-26850546	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs787017	chr10:26850563-26850564	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs562427170	chr10:26850694-26850695	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs1775233	chr10:26850698-26850699	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs191566749	chr10:26850701-26850702	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs61838877	chr10:26850709-26850710	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs149714527	chr10:26850725-26850726	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs530330239	chr10:26850740-26850741	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs144747612	chr10:26850769-26850770	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs987206	chr10:26850781-26850782	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs199988836	chr10:26850821-26850822	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs567155881	chr10:26850852-26850853	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs377152634	chr10:26850900-26850901	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs551914806	chr10:26850951-26850952	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs41279920	chr10:26850991-26850992	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs369880224	chr10:26851007-26851008	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs72805221	chr10:26851023-26851024	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs537975496	chr10:26851026-26851027	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs187685744	chr10:26851036-26851037	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs574805622	chr10:26851097-26851098	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534016003	chr10:26851119-26851120	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs191307690	chr10:26851120-26851121	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs577222077	chr10:26851138-26851139	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs35016443	chr10:26851163-26851164	Weak transcription Enhancers Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs562515654	chr10:26851168-26851169	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs576086973	chr10:26851170-26851171	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs201063855	chr10:26851283-26851284	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200319514	chr10:26851321-26851322	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs199535099	chr10:26851355-26851356	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201466636	chr10:26851365-26851366	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs200645225	chr10:26851396-26851397	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs4615924	chr10:26851397-26851398	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs375423001	chr10:26851400-26851401	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs367850834	chr10:26851432-26851433	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs111666585	chr10:26851457-26851458	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs527348047	chr10:26851502-26851503	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs574477709	chr10:26851505-26851506	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs560510830	chr10:26851512-26851513	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs375052558	chr10:26851514-26851515	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs552429206	chr10:26851548-26851549	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs568943263	chr10:26851591-26851592	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs750477	chr10:26851631-26851632	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs548262698	chr10:26851634-26851635	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs568545847	chr10:26851683-26851684	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs199563056	chr10:26851726-26851727	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs368135737	chr10:26851727-26851728	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs558618118	chr10:26851823-26851824	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184563726	chr10:26851827-26851828	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs556916982	chr10:26851829-26851830	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs187840892	chr10:26851835-26851836	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
abnormal development	18461090	CNVD

Chromatin state (count:335 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26802200-26853400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr10:26834800-26858400	Strong transcription	Dnd41	blood
3	chr10:26839400-26854200	Strong transcription	Primary T cells from cord blood	blood
4	chr10:26839600-26860800	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr10:26839800-26861200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr10:26840000-26850600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr10:26840000-26860000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr10:26840200-26855200	Weak transcription	Placenta	Placenta
9	chr10:26840200-26863200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:26845000-26855600	Weak transcription	Esophagus	oesophagus
11	chr10:26845200-26853600	Strong transcription	Thymus	Thymus
12	chr10:26845400-26863000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr10:26846000-26854000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr10:26846000-26859600	Strong transcription	Primary B cells from cord blood	blood
15	chr10:26846200-26859000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:26846400-26860800	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr10:26846400-26861600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr10:26846600-26858200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:26846600-26858400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:26846600-26859600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:26846600-26860800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:26846800-26851000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:26846800-26851000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:26846800-26859400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:26846800-26861200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:26846800-26863000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:26847200-26854000	Weak transcription	Osteobl	bone
28	chr10:26847600-26857400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:26848200-26861000	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr10:26848400-26863000	Strong transcription	Fetal Thymus	thymus
31	chr10:26848600-26855600	Weak transcription	Gastric	stomach
32	chr10:26848800-26855400	Strong transcription	Primary hematopoietic stem cells	blood
33	chr10:26848800-26857800	Strong transcription	Liver	Liver
34	chr10:26849000-26852200	Strong transcription	Duodenum Mucosa	Duodenum
35	chr10:26849000-26854800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:26849000-26855000	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr10:26849000-26855400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
38	chr10:26849000-26855600	Strong transcription	Adipose Nuclei	Adipose
39	chr10:26849000-26857600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
40	chr10:26849000-26859000	Strong transcription	GM12878-XiMat	blood
41	chr10:26849000-26860600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr10:26849200-26855400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:26849200-26855400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr10:26849400-26855600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:26849400-26855600	Weak transcription	Pancreas	Pancrea
46	chr10:26849600-26855400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:26849800-26851200	Weak transcription	Spleen	Spleen
48	chr10:26849800-26853400	Weak transcription	Lung	lung
49	chr10:26849800-26853800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr10:26850600-26852400	Strong transcription	Rectal Mucosa Donor 29	rectum

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