Variant report

Variant	nsv971878
Chromosome Location	chr10:37836844-37850135
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:37835588..37837794-chr10:37842395..37844055,2	MCF-7	breast:
2	chr10:37835588..37837794-chr10:37842395..37844055,2	MCF-7	breast:
3	chr10:37842767..37844391-chr8:38728590..38730203,2	MCF-7	breast:

Extended variants
information (count: 236 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:236 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs560190902	chr10:37836891-37836892	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs2384716	chr10:37836928-37836929	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs546281901	chr10:37836930-37836931	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs559964129	chr10:37836952-37836953	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs371515624	chr10:37836973-37836974	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs529035567	chr10:37836977-37836978	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs189882965	chr10:37837000-37837001	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs569022206	chr10:37837089-37837090	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs564602686	chr10:37837130-37837131	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs9417249	chr10:37837155-37837156	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs551023601	chr10:37837159-37837160	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs570845273	chr10:37837162-37837163	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs539985241	chr10:37837187-37837188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs553456785	chr10:37837192-37837193	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs140948995	chr10:37837233-37837234	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs35378218	chr10:37837234-37837235	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs182260317	chr10:37837239-37837240	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs575873683	chr10:37837271-37837272	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs542009858	chr10:37837337-37837338	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs2474872	chr10:37837364-37837365	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs557489700	chr10:37837386-37837387	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs563780710	chr10:37837471-37837472	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs577217464	chr10:37837489-37837490	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs10827797	chr10:37837513-37837514	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs150184520	chr10:37837522-37837523	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs186584035	chr10:37837536-37837537	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs138137076	chr10:37837571-37837572	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs71489156	chr10:37837572-37837573	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs183570190	chr10:37837575-37837576	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs531544002	chr10:37837590-37837591	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs551697353	chr10:37837617-37837618	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs376753999	chr10:37837678-37837679	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs570861097	chr10:37837739-37837740	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs539802501	chr10:37837744-37837745	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs77305184	chr10:37837778-37837779	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs373063468	chr10:37837787-37837788	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs76237034	chr10:37837810-37837811	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs75848790	chr10:37837816-37837817	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530155588	chr10:37837819-37837820	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs375895008	chr10:37837821-37837822	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs542165855	chr10:37837832-37837833	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs535919481	chr10:37837867-37837868	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs2384717	chr10:37837875-37837876	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs575783444	chr10:37837888-37837889	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs530420101	chr10:37838011-37838012	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs538195950	chr10:37838125-37838126	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs574500103	chr10:37838131-37838132	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs199809479	chr10:37838133-37838134	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs557984929	chr10:37838198-37838199	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs577231446	chr10:37838203-37838204	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Bethlem myopathy	20302629	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hepatocellular carcinoma	16785998	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Lung cancer	21569311	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37836800-37837000	Enhancers	Left Ventricle	heart
2	chr10:37836800-37837200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr10:37836800-37837600	Enhancers	Right Atrium	heart
4	chr10:37836800-37838200	Enhancers	Colon Smooth Muscle	Colon
5	chr10:37837000-37837600	Enhancers	Adipose Nuclei	Adipose
6	chr10:37837200-37842000	Weak transcription	Left Ventricle	heart
7	chr10:37837600-37842000	Weak transcription	Right Atrium	heart
8	chr10:37838200-37838800	Enhancers	HSMMtube	muscle
9	chr10:37842000-37842200	Enhancers	Right Atrium	heart
10	chr10:37842000-37842600	Enhancers	Left Ventricle	heart
11	chr10:37842200-37843000	Weak transcription	Right Atrium	heart
12	chr10:37843000-37843200	Enhancers	Right Atrium	heart

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