Variant report

Variant	nsv971911
Chromosome Location	chr10:54922353-54950931
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:107 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554360604	chr10:54922355-54922356	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs557378028	chr10:54922376-54922377	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs576430650	chr10:54922462-54922463	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs542140243	chr10:54922507-54922508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs182937853	chr10:54922602-54922603	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs4626987	chr10:54922642-54922643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs144247824	chr10:54922651-54922652	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs564048223	chr10:54922657-54922658	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs150122843	chr10:54922681-54922682	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs372027885	chr10:54922687-54922688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs533009734	chr10:54922702-54922703	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs543046536	chr10:54922717-54922718	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs562943446	chr10:54922719-54922720	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs560289362	chr10:54922727-54922728	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs377400602	chr10:54922733-54922734	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs549275476	chr10:54922734-54922735	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs565985808	chr10:54922744-54922745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs369179913	chr10:54922775-54922776	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs544635498	chr10:54922781-54922782	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs7073495	chr10:54922812-54922813	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs7076961	chr10:54922883-54922884	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs192071844	chr10:54922902-54922903	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs184469281	chr10:54922903-54922904	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs116273659	chr10:54922926-54922927	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs2384119	chr10:54922949-54922950	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs536605857	chr10:54922979-54922980	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs555699844	chr10:54922993-54922994	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs146576511	chr10:54923023-54923024	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs534533438	chr10:54923042-54923043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs74134879	chr10:54923075-54923076	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs7077265	chr10:54923099-54923100	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs543105664	chr10:54923126-54923127	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs370887663	chr10:54923138-54923139	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs531733178	chr10:54923141-54923142	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs149514077	chr10:54934000-54934001	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs544105957	chr10:54934001-54934002	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs563782371	chr10:54934068-54934069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs75709135	chr10:54934090-54934091	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs372449845	chr10:54934098-54934099	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs372735558	chr10:54934110-54934111	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs12249831	chr10:54934122-54934123	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs78886051	chr10:54934125-54934126	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs77836553	chr10:54934144-54934145	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs372987453	chr10:54934205-54934206	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs369275020	chr10:54934240-54934241	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs530877722	chr10:54934262-54934263	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs550074440	chr10:54934272-54934273	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs569819438	chr10:54934304-54934305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs114205883	chr10:54934313-54934314	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs375168325	chr10:54934331-54934332	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Developmental delay	21948486	CNVD
Dysmorphic features	21948486	CNVD
Epilepsy	21948486	CNVD
Intellectual disability	21948486	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Colorectal cancer	16774939	CNVD
Autism	20858243	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54922000-54922600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr10:54922600-54923200	Enhancers	Liver	Liver
3	chr10:54934000-54934400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:54934000-54934400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:54935000-54935200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:54936800-54938000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links