Variant report

Variant	nsv971934
Chromosome Location	chr11:25508001-25517080
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 309 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:309 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs369844846	chr11:25508032-25508033	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs184647747	chr11:25508039-25508040	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs368232029	chr11:25508047-25508048	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs59593194	chr11:25508049-25508050	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs188956787	chr11:25508051-25508052	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs534772771	chr11:25508052-25508053	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs149725808	chr11:25508053-25508054	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs567960312	chr11:25508072-25508073	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs11028715	chr11:25508074-25508075	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs145555674	chr11:25508076-25508077	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs181327983	chr11:25508097-25508098	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs575212697	chr11:25508112-25508113	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs545900873	chr11:25508131-25508132	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs139266946	chr11:25508151-25508152	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs375583756	chr11:25508227-25508228	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs186339844	chr11:25508232-25508233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs540776026	chr11:25508235-25508236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs562266609	chr11:25508253-25508254	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs575951022	chr11:25508304-25508305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs529555689	chr11:25508306-25508307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs372937895	chr11:25508312-25508313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs144160774	chr11:25508327-25508328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs530489146	chr11:25508375-25508376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs189184056	chr11:25508382-25508383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs551893244	chr11:25508413-25508414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs181067205	chr11:25508436-25508437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs528168760	chr11:25508447-25508448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs546715014	chr11:25508486-25508487	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs185032646	chr11:25508528-25508529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs528313307	chr11:25508531-25508532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs535295466	chr11:25508542-25508543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs7110877	chr11:25508550-25508551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs7111008	chr11:25508589-25508590	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs564759227	chr11:25508590-25508591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs183151877	chr11:25508594-25508595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs557872877	chr11:25508650-25508651	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs550396320	chr11:25508679-25508680	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs573238159	chr11:25508685-25508686	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs534028220	chr11:25508698-25508699	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs140812962	chr11:25508706-25508707	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs185933801	chr11:25508755-25508756	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs544832275	chr11:25508783-25508784	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs368084078	chr11:25508797-25508798	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs191679503	chr11:25508809-25508810	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs11028716	chr11:25508952-25508953	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs183022880	chr11:25509018-25509019	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs538632664	chr11:25509024-25509025	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs566101698	chr11:25509073-25509074	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs528121759	chr11:25509075-25509076	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs188453924	chr11:25509079-25509080	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25506600-25508200	Enhancers	Fetal Lung	lung
2	chr11:25506800-25508200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:25506800-25508200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr11:25507800-25508200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr11:25508000-25512600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:25508200-25508600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:25508200-25509000	Weak transcription	Fetal Lung	lung
8	chr11:25508600-25509400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:25508800-25509200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:25509000-25509200	Enhancers	Fetal Lung	lung
11	chr11:25509400-25510000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr11:25510000-25510200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:25512600-25513400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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