Variant report

Variant	nsv972071
Chromosome Location	chr11:108692399-108693604
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EXPH5-5	chr11:108693060-108693377	NONHSAT024040

Extended variants
information (count: 42 )
Associated
traits (count: 93 )

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552813096	chr11:108692431-108692432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs140848638	chr11:108692436-108692437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs369305336	chr11:108692443-108692444	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs556380678	chr11:108692462-108692463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs181247508	chr11:108692496-108692497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs563598190	chr11:108692523-108692524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs530757667	chr11:108692528-108692529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs565582148	chr11:108692545-108692546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs543399281	chr11:108692561-108692562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs527943522	chr11:108692563-108692564	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs11212787	chr11:108692609-108692610	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs531108295	chr11:108692630-108692631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs566051050	chr11:108692640-108692641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs530265819	chr11:108692656-108692657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs375720305	chr11:108692661-108692662	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs146115799	chr11:108692662-108692663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs570354100	chr11:108692681-108692682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs113339686	chr11:108692719-108692720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs186515360	chr11:108692808-108692809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs570430440	chr11:108692882-108692883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs567161864	chr11:108692892-108692893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs534335780	chr11:108692902-108692903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs552989893	chr11:108692926-108692927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs574496394	chr11:108692928-108692929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs7484098	chr11:108692972-108692973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs535631139	chr11:108693003-108693004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs556774482	chr11:108693145-108693146	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs529771307	chr11:108693154-108693155	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs112131601	chr11:108693179-108693180	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs575176070	chr11:108693181-108693182	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs141117701	chr11:108693225-108693226	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs555537215	chr11:108693238-108693239	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs1824665	chr11:108693244-108693245	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs146920917	chr11:108693245-108693246	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs191843487	chr11:108693284-108693285	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs559793374	chr11:108693297-108693298	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs73009370	chr11:108693299-108693300	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs549556574	chr11:108693406-108693407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs563898499	chr11:108693407-108693408	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs531146878	chr11:108693453-108693454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs116783616	chr11:108693516-108693517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs571168282	chr11:108693521-108693522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:93)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	17603634	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Mental retardation	19966786	CNVD
Non-small cell lung cancer	21829676	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Intracranial aneurysm	16715129	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Ovarian cancer	21720365	CNVD
Chronic lymphocytic leukemia	17805327	CNVD
Glioblastoma multiforme	22286061	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Neuroblastoma	17327916	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Mantle cell lymphoma	19029149	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Malignant melanoma	17260012	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Obesity	19966786	CNVD
Renal cell carcinoma	21668985	CNVD
Cancer	20164920	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Developmental delay	21147756	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108675600-108694800	Weak transcription	Ovary	ovary
2	chr11:108675600-108709400	Weak transcription	Left Ventricle	heart
3	chr11:108675800-108700000	Weak transcription	GM12878-XiMat	blood
4	chr11:108676000-108708000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:108677600-108709600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:108680400-108709400	Weak transcription	Primary T cells from cord blood	blood
7	chr11:108680600-108724400	Weak transcription	Aorta	Aorta
8	chr11:108687000-108717000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr11:108689800-108695400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:108690800-108695000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:108692200-108709400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:108692400-108695600	Weak transcription	Muscle Satellite Cultured Cells	--

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