Variant report

Variant	nsv972213
Chromosome Location	chr8:78431355-78441097
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFHX4-3	chr8:78436701-78436793	ENSG00000254366
2	lnc-ZFHX4-3	chr8:78436701-78436793	NONHSAT127353
3	lnc-ZFHX4-3	chr8:78436701-78436793	ENSG00000254366.2

Extended variants
information (count: 82 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:82 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs538810206	chr8:78432402-78432403	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs13264449	chr8:78432418-78432419	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs182054432	chr8:78432457-78432458	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs370933371	chr8:78432505-78432506	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs575033707	chr8:78432523-78432524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs145773460	chr8:78432543-78432544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs554294020	chr8:78432599-78432600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs186466805	chr8:78432635-78432636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs113719770	chr8:78432637-78432638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs530717731	chr8:78432666-78432667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs376040820	chr8:78432668-78432669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs138614285	chr8:78432685-78432686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs566006772	chr8:78432711-78432712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs190851334	chr8:78432715-78432716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs377563755	chr8:78432818-78432819	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs544466634	chr8:78432822-78432823	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs13272657	chr8:78432835-78432836	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs562663230	chr8:78432892-78432893	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs13272699	chr8:78432932-78432933	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs370803079	chr8:78432933-78432934	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs827479	chr8:78432934-78432935	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs112301685	chr8:78432936-78432937	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs531062783	chr8:78432938-78432939	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs549478178	chr8:78432965-78432966	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs202048728	chr8:78432972-78432973	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs200018592	chr8:78432975-78432976	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs375698743	chr8:78432976-78432977	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs827480	chr8:78432985-78432986	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs528453828	chr8:78433006-78433007	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs28694158	chr8:78433026-78433027	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs71260384	chr8:78433030-78433031	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs150219560	chr8:78433031-78433032	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs398008448	chr8:78433050-78433051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs375136132	chr8:78433064-78433065	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs113602015	chr8:78433095-78433096	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs554431047	chr8:78433118-78433119	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs151058146	chr8:78433153-78433154	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs183531956	chr8:78433164-78433165	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs538935611	chr8:78433179-78433180	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs117606470	chr8:78433194-78433195	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs113425757	chr8:78433200-78433201	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs569085801	chr8:78433209-78433210	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs558242439	chr8:78433220-78433221	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs367804683	chr8:78433269-78433270	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs535962583	chr8:78433305-78433306	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs560584735	chr8:78435816-78435817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs180896005	chr8:78435824-78435825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs546468536	chr8:78435829-78435830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs564662764	chr8:78435849-78435850	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs150462571	chr8:78435863-78435864	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	16751803	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
Sezary syndrome	18413736	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	16461572	CNVD
Breast cancer	21399628	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
small cell lung cancer	20016488	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	17393978	CNVD
Burkitt''s lymphoma	18698080	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Colorectal cancer	19455253	CNVD
Bladder cancer	19088036	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17899364	CNVD
Urothelial cell carcinoma	18451213	CNVD
Intellectual disability	21802062	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78432400-78432800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:78432800-78433200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:78432800-78433400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr8:78435800-78436000	Enhancers	Brain Hippocampus Middle	brain
5	chr8:78438800-78439400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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