Variant report

Variant	nsv972280
Chromosome Location	chr9:105023592-105027711
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:112 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs190437556	chr9:105024666-105024667	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs563376706	chr9:105024679-105024680	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs531675192	chr9:105024708-105024709	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs577117381	chr9:105024737-105024738	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs551483983	chr9:105024766-105024767	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs6479096	chr9:105024768-105024769	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs74564458	chr9:105024782-105024783	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs207470426	chr9:105024794-105024795	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs547727209	chr9:105024824-105024825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs139463685	chr9:105024833-105024834	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs12339045	chr9:105024838-105024839	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs34415684	chr9:105025042-105025043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs149681186	chr9:105025067-105025068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs570289576	chr9:105025133-105025134	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs12006153	chr9:105025138-105025139	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
16	rs182154908	chr9:105025160-105025161	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs375355099	chr9:105025161-105025162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs369749859	chr9:105025163-105025164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs560124580	chr9:105025173-105025174	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs541028663	chr9:105025183-105025184	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs554312484	chr9:105025190-105025191	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs74899116	chr9:105025194-105025195	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs12006169	chr9:105025248-105025249	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs145532924	chr9:105025257-105025258	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs532193143	chr9:105025279-105025280	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs10820110	chr9:105025285-105025286	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs565044783	chr9:105025311-105025312	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs186420818	chr9:105025328-105025329	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs547761287	chr9:105025329-105025330	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs141333830	chr9:105025339-105025340	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs567588271	chr9:105025349-105025350	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs79340113	chr9:105025359-105025360	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs550227118	chr9:105025399-105025400	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs570227580	chr9:105025409-105025410	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs76297341	chr9:105025426-105025427	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs535594454	chr9:105025469-105025470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs552254646	chr9:105025483-105025484	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs76346940	chr9:105025533-105025534	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs564395331	chr9:105025534-105025535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs370823187	chr9:105025545-105025546	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs188920631	chr9:105025564-105025565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs533588973	chr9:105025606-105025607	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs554532041	chr9:105025607-105025608	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs181629285	chr9:105025618-105025619	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs185404738	chr9:105025624-105025625	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs544557625	chr9:105025710-105025711	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs568199167	chr9:105025718-105025719	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs556848085	chr9:105025808-105025809	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs10989936	chr9:105025885-105025886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs576585855	chr9:105025910-105025911	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Neuroblastoma	20406844	CNVD
Schizophrenia	23813976	CNVD
Basal cell lymphoma	21115979	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105024600-105024800	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr9:105024600-105026200	Enhancers	Fetal Kidney	kidney
3	chr9:105026200-105026800	Weak transcription	Fetal Kidney	kidney
4	chr9:105026600-105027200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr9:105026800-105027000	Enhancers	Fetal Kidney	kidney

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