Variant report

Variant	nsv972301
Chromosome Location	chr9:21449393-21450058
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 150 )

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs541631187	chr9:21449397-21449398	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs561921163	chr9:21449419-21449420	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs73422254	chr9:21449433-21449434	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs544505820	chr9:21449449-21449450	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs530857585	chr9:21449470-21449471	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs183322891	chr9:21449493-21449494	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs367631790	chr9:21449498-21449499	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs546656305	chr9:21449529-21449530	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs368048251	chr9:21449530-21449531	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs187964444	chr9:21449532-21449533	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs192050086	chr9:21449540-21449541	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs184546935	chr9:21449551-21449552	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs528554848	chr9:21449557-21449558	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs140744166	chr9:21449562-21449563	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs538090977	chr9:21449578-21449579	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs144598681	chr9:21449610-21449611	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs146674661	chr9:21449637-21449638	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs533898000	chr9:21449648-21449649	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs375822130	chr9:21449681-21449682	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs554157916	chr9:21449777-21449778	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs189690878	chr9:21449798-21449799	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs192696017	chr9:21449799-21449800	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs201792306	chr9:21449837-21449838	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs7042410	chr9:21449852-21449853	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs575503967	chr9:21449854-21449855	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs151083769	chr9:21449916-21449917	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs547239747	chr9:21449957-21449958	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs544444456	chr9:21449967-21449968	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs59635965	chr9:21449978-21449979	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs375106653	chr9:21449986-21449987	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs184995032	chr9:21450016-21450017	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs140117588	chr9:21450018-21450019	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs368356930	chr9:21450031-21450032	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs72701398	chr9:21450041-21450042	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs554416409	chr9:21450049-21450050	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:150)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Glioblastoma multiforme	21569311	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Glioma	20126413	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Glioblastoma multiforme	21525872	CNVD
Glioblastoma multiforme	21138945	CNVD
Adenoid cystic carcinoma	18332873	CNVD
Breast cancer	21364760	CNVD
Cancer	20581869	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Oral cancer	22144094	CNVD
Lung cancer	21569311	CNVD
Epilepsy	20502679	CNVD
Barrett''s syndrome	19417022	CNVD
Pancreatic cancer	21811587	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21447000-21450800	Weak transcription	Colon Smooth Muscle	Colon
2	chr9:21447400-21450800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr9:21448400-21455400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:21449200-21449800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:21449200-21450400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:21449200-21450400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:21449200-21450800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:21449400-21449600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:21449400-21449600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:21449400-21453800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:21449600-21449800	Enhancers	NHEK	skin
12	chr9:21449600-21451400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:21449600-21453800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr9:21449800-21450000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:21449800-21450000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:21449800-21451000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:21449800-21453800	Weak transcription	NHEK	skin
18	chr9:21450000-21450600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:21450000-21452800	Weak transcription	Muscle Satellite Cultured Cells	--

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