Variant report

Variant	nsv972302
Chromosome Location	chr9:26230724-26233548
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 116 )

Variant overlapped rSNPs/rCNVs (count:121 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs552307343	chr9:26230744-26230745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs140703312	chr9:26230745-26230746	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs58242636	chr9:26230779-26230780	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs116502720	chr9:26230841-26230842	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs574659705	chr9:26230853-26230854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs535411807	chr9:26230870-26230871	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs553924850	chr9:26230886-26230887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs571920813	chr9:26230940-26230941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs545846570	chr9:26231046-26231047	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs1865438	chr9:26231112-26231113	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs575996245	chr9:26231115-26231116	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs543786927	chr9:26231163-26231164	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs561970522	chr9:26231166-26231167	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs184643433	chr9:26231183-26231184	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs188729543	chr9:26231205-26231206	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs559944592	chr9:26231210-26231211	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs181462468	chr9:26231235-26231236	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs184535895	chr9:26231241-26231242	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs538516006	chr9:26231280-26231281	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs189444393	chr9:26231290-26231291	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs531468195	chr9:26231297-26231298	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs141392760	chr9:26231337-26231338	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs568004751	chr9:26231353-26231354	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs182296843	chr9:26231361-26231362	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs186020621	chr9:26231381-26231382	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs565512159	chr9:26231386-26231387	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs190885421	chr9:26231387-26231388	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs537979497	chr9:26231400-26231401	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs574529299	chr9:26231405-26231406	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs76720702	chr9:26231417-26231418	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs397894819	chr9:26231418-26231419	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs180985807	chr9:26231435-26231436	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs576108728	chr9:26231448-26231449	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs372611264	chr9:26231465-26231466	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs543602611	chr9:26231468-26231469	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs548138039	chr9:26231490-26231491	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs555720637	chr9:26231504-26231505	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs573958482	chr9:26231510-26231511	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs541662332	chr9:26231517-26231518	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs560109485	chr9:26231521-26231522	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs533530338	chr9:26231522-26231523	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs116009600	chr9:26231529-26231530	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs563900639	chr9:26231566-26231567	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs567878644	chr9:26231620-26231621	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs112259108	chr9:26231627-26231628	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs531431680	chr9:26231651-26231652	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs564589150	chr9:26231665-26231666	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs185310441	chr9:26231673-26231674	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs553340177	chr9:26231694-26231695	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs190123892	chr9:26231775-26231776	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:116)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26228600-26231000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:26228600-26237800	Weak transcription	HUVEC	blood vessel
3	chr9:26231000-26231800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:26231000-26232400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:26231800-26234400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:26232000-26232400	Enhancers	Fetal Brain Male	brain
7	chr9:26232400-26234600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:26232400-26237400	Weak transcription	Fetal Brain Male	brain

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