Variant report
| Variant | nsv972343 |
|---|---|
| Chromosome Location | chr9:43164601-43178182 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:13)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:13 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr9:43177474-43177523 | LNCaP | prostate: | n/a | n/a |
| 2 | CTCF | chr9:43169194-43169261 | Spleen_OC | spleen: | n/a | n/a |
| 3 | CTCF | chr9:43176709-43176773 | Spleen_OC | spleen: | n/a | n/a |
| 4 | CTCF | chr9:43178088-43178126 | LNCaP | prostate: | n/a | n/a |
| 5 | CTCF | chr9:43169458-43169523 | Lung_OC | lung: | n/a | n/a |
| 6 | CTCF | chr9:43177975-43178084 | GM13976 | blood: | n/a | n/a |
| 7 | CTCF | chr9:43174466-43174561 | GM13976 | blood: | n/a | n/a |
| 8 | CTCF | chr9:43176294-43176373 | Lung_OC | lung: | n/a | n/a |
| 9 | CTCF | chr9:43173717-43173754 | Medullo | brain: | n/a | n/a |
| 10 | CTCF | chr9:43177023-43177050 | Kidney_OC | kidney: | n/a | n/a |
| 11 | PBX3 | chr9:43176624-43176842 | GM12878 | blood: | n/a | chr9:43176759-43176768 |
| 12 | POU2F2 | chr9:43170146-43170483 | GM12878 | blood: | n/a | n/a |
| 13 | USF1 | chr9:43165189-43165346 | HepG2 | liver: | n/a | chr9:43165285-43165296 |
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ANKRD20A3-7 | chr9:43177955-43178014 | NONHSAT131355 |
| 2 | lnc-ANKRD20A3-7 | chr9:43178104-43178145 | NONHSAT131355 |
| 3 | lnc-ANKRD20A3-7 | chr9:43177211-43177295 | NONHSAT131355 |
| 4 | lnc-ANKRD20A3-7 | chr9:43174019-43175549 | NONHSAT131355 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224303 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs568750939 | chr9:43174361-43174362 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs549580466 | chr9:43174379-43174380 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs200440717 | chr9:43174380-43174381 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs567786288 | chr9:43174411-43174412 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs3120055 | chr9:43174652-43174653 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs12344235 | chr9:43175072-43175073 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs12335981 | chr9:43175091-43175092 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs11262138 | chr9:43175462-43175463 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:67)
| Disease | PMID | Source |
|---|---|---|
| Gastric cancer | 21586687 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Myopathy | 18421352 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Acute lymphoblastic leukemia | 18957548 | CNVD |
| Myeloproliferative neoplasm | 17564968 | CNVD |
| Malignant meningioma | 17937814 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Glioma | 21971842 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Melanoma | 18172304 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Cutaneous squamous cell carcinomas | 19131950 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Chordoma | 18071362 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Chordoma | 21602918 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Developmental delay | 19490664 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| microdeletion syndrome | 16199537 | CNVD |
| Cancer | 20164919 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Autism | 22495311 | CNVD |
| Melanoma | 22183965 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Acute lymphoblastic leukemia | 21098271 | CNVD |
| Cancer | 16751803 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Non-syndromic sensorineural hearing loss | 17289997 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Breast cancer | 21509527 | CNVD |
| Sezary syndrome | 18413736 | CNVD |
| Breast cancer | 20409316 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| Schizophrenia | 21346763 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Breast cancer | 21990379 | CNVD |
| Astrocytoma | 22246337 | CNVD |
| Lung adenocarcinoma | 17086460 | CNVD |
| Barrett''s adenocarcinoma | 18663352 | CNVD |
| Ovarian clear cell carcinoma | 21343371 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
