Variant report

Variant	nsv972422
Chromosome Location	chr9:97110562-97121990
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 269 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:269 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112606355	chr9:97110818-97110819	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs201155303	chr9:97111514-97111515	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs570790378	chr9:97111676-97111677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs2025872	chr9:97111678-97111679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs551141581	chr9:97111878-97111879	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs187771094	chr9:97111903-97111904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs572371296	chr9:97111928-97111929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs372566431	chr9:97111935-97111936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs200653844	chr9:97111972-97111973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs536965218	chr9:97112015-97112016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs201750778	chr9:97112071-97112072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs375395467	chr9:97112090-97112091	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs554847814	chr9:97112174-97112175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs576186093	chr9:97112186-97112187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs543182445	chr9:97112240-97112241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs555597725	chr9:97112241-97112242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs548065267	chr9:97112255-97112256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs2769772	chr9:97112263-97112264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs148437611	chr9:97112279-97112280	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
20	rs142550855	chr9:97112303-97112304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs147353334	chr9:97112392-97112393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs146069057	chr9:97112393-97112394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs201880715	chr9:97112397-97112398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs200200185	chr9:97112400-97112401	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs140137205	chr9:97112424-97112425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs143756414	chr9:97112450-97112451	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
27	rs2769771	chr9:97112496-97112497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs192479872	chr9:97112516-97112517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs548469822	chr9:97112542-97112543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs149992494	chr9:97112550-97112551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs531117330	chr9:97112583-97112584	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs578132134	chr9:97112589-97112590	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs570944299	chr9:97112600-97112601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs184477000	chr9:97112638-97112639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs368611086	chr9:97112651-97112652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190174555	chr9:97112670-97112671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs553409904	chr9:97112846-97112847	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs568452446	chr9:97112883-97112884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs536599399	chr9:97113091-97113092	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs554830325	chr9:97113135-97113136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs62579695	chr9:97113290-97113291	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs543620678	chr9:97113331-97113332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs558440638	chr9:97113373-97113374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs371929974	chr9:97113414-97113415	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs540684570	chr9:97113501-97113502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs542961336	chr9:97113595-97113596	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs558964916	chr9:97113616-97113617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs574071805	chr9:97113642-97113643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs1887686	chr9:97113657-97113658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112001789	chr9:97113725-97113726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Microcephaly	18830227	CNVD
overgrowth syndrome	16570072	CNVD
Effusion lymphoma	18079361	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97110400-97114000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:97114000-97114200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:97114200-97114600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr9:97114600-97114800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr9:97114800-97117600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr9:97117600-97119000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:97118600-97118800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:97118800-97119800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr9:97119000-97119400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr9:97119400-97123600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr9:97119800-97120400	Enhancers	Primary monocytes fromperipheralblood	blood

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