Variant report

Variant	nsv972434
Chromosome Location	chr9:101581923-101585741
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:101569334..101572126-chr9:101582061..101584787,3	MCF-7	breast:
2	chr9:101568720..101574310-chr9:101584029..101588574,5	MCF-7	breast:
3	chr9:101574618..101578718-chr9:101578881..101584261,5	K562	blood:
4	chr9:101583330..101586949-chr9:101590792..101593415,3	MCF-7	breast:
5	chr9:101567740..101569488-chr9:101580448..101582310,2	K562	blood:
6	chr9:101573972..101577031-chr9:101580194..101584196,5	MCF-7	breast:
7	chr9:101583304..101585662-chr9:101606150..101607939,2	K562	blood:
8	chr9:101579352..101582875-chr9:101585039..101587415,4	K562	blood:
9	chr9:101571350..101572921-chr9:101580926..101583475,2	K562	blood:
10	chr9:101559911..101562273-chr9:101583988..101585996,2	K562	blood:
11	chr9:101581569..101586454-chr9:101592165..101596926,7	K562	blood:
12	chr9:101569167..101574169-chr9:101584327..101589428,7	K562	blood:
13	chr9:101570303..101574512-chr9:101580563..101586059,9	K562	blood:
14	chr9:101569598..101571406-chr9:101580891..101583323,2	MCF-7	breast:
15	chr9:101579352..101582875-chr9:101585039..101587415,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000119514	chromatin interactions

Extended variants
information (count: 143 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:143 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs534242272	chr9:101581936-101581937	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs35005965	chr9:101581954-101581955	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs116805475	chr9:101581975-101581976	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs567979158	chr9:101581978-101581979	Weak transcription ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs561650216	chr9:101582056-101582057	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs536419926	chr9:101582086-101582087	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs190765094	chr9:101582133-101582134	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs575371540	chr9:101582139-101582140	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs544327578	chr9:101582157-101582158	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs557932535	chr9:101582158-101582159	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs373653758	chr9:101582160-101582161	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs180880399	chr9:101582234-101582235	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs577703154	chr9:101582236-101582237	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs540257738	chr9:101582244-101582245	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs540598665	chr9:101582284-101582285	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs560165203	chr9:101582289-101582290	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs529207862	chr9:101582293-101582294	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs542421452	chr9:101582375-101582376	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs562349512	chr9:101582405-101582406	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs546500111	chr9:101582450-101582451	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs184896334	chr9:101582453-101582454	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs565305249	chr9:101582481-101582482	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs551454918	chr9:101582507-101582508	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs528829706	chr9:101582547-101582548	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs571444530	chr9:101582551-101582552	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs527667062	chr9:101582555-101582556	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs547793631	chr9:101582580-101582581	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs142961466	chr9:101582590-101582591	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs151110860	chr9:101582604-101582605	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs139918130	chr9:101582643-101582644	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs570260243	chr9:101582667-101582668	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs539280110	chr9:101582668-101582669	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs557871177	chr9:101582669-101582670	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs528769075	chr9:101582685-101582686	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs374336903	chr9:101582686-101582687	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs533525291	chr9:101582697-101582698	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs551065064	chr9:101582737-101582738	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs573811407	chr9:101582768-101582769	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs562227532	chr9:101582789-101582790	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs562486730	chr9:101582833-101582834	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs6478895	chr9:101582842-101582843	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
42	rs189702524	chr9:101582917-101582918	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs183428534	chr9:101582929-101582930	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs527802715	chr9:101582950-101582951	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs7861195	chr9:101582972-101582973	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
46	rs143788797	chr9:101583028-101583029	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs12685951	chr9:101583034-101583035	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs4743283	chr9:101583049-101583050	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs550486452	chr9:101583081-101583082	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs187915223	chr9:101583096-101583097	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
overgrowth syndrome	16570072	CNVD
Neurodevelopmental disorder	22521361	CNVD
Nicotine dependence	17160897	CNVD
Mantle cell lymphoma	19029149	CNVD
Esophageal cancer	21851588	CNVD
Melanoma	17363583	CNVD

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101571000-101586600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:101572600-101585800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:101572600-101586600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr9:101572800-101589200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:101573000-101586600	Weak transcription	Esophagus	oesophagus
6	chr9:101573000-101612800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:101573800-101586000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:101574000-101585800	Weak transcription	Primary T cells from cord blood	blood
9	chr9:101574400-101585200	Weak transcription	Stomach Mucosa	stomach
10	chr9:101576000-101605000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr9:101577400-101585600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:101577800-101610600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:101578000-101596800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:101579200-101610800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr9:101580600-101582000	ZNF genes & repeats	Fetal Intestine Small	intestine
16	chr9:101581200-101582000	ZNF genes & repeats	Aorta	Aorta
17	chr9:101581200-101582200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr9:101581200-101585400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr9:101581400-101582000	Enhancers	K562	blood
20	chr9:101581400-101586600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr9:101581400-101586600	Weak transcription	Colonic Mucosa	Colon
22	chr9:101581600-101586200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr9:101581600-101591000	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr9:101581800-101584800	Weak transcription	Fetal Stomach	stomach
25	chr9:101581800-101585000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr9:101581800-101585600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:101581800-101585800	Weak transcription	Gastric	stomach
28	chr9:101581800-101592400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr9:101582000-101584000	Weak transcription	K562	blood
30	chr9:101582000-101584400	Weak transcription	Fetal Intestine Small	intestine
31	chr9:101582000-101588800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr9:101582000-101610600	Weak transcription	Aorta	Aorta
33	chr9:101583800-101588800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:101583800-101589600	Weak transcription	Colon Smooth Muscle	Colon
35	chr9:101583800-101599600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr9:101583800-101610600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr9:101584000-101585000	Enhancers	K562	blood
38	chr9:101584200-101584400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:101584200-101584600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:101584400-101584600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr9:101584400-101587200	Strong transcription	Fetal Intestine Small	intestine
42	chr9:101584400-101602000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr9:101584600-101586200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:101584800-101602600	Strong transcription	Fetal Stomach	stomach
45	chr9:101585000-101585200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr9:101585000-101585400	Weak transcription	K562	blood
47	chr9:101585000-101591000	Strong transcription	Duodenum Mucosa	Duodenum
48	chr9:101585000-101610600	Weak transcription	Brain Angular Gyrus	brain
49	chr9:101585000-101611000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr9:101585200-101586000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links