Variant report

Variant	nsv972553
Chromosome Location	chr8:64826295-64850240
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-32K4.2.1-5	chr8:64844542-64844957	ucscGeneNc_uc003xvc_2

Extended variants
information (count: 237 )
Associated
traits (count: 95 )

Variant overlapped rSNPs/rCNVs (count:237 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs548042033	chr8:64826327-64826328	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs113691402	chr8:64826397-64826398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs1025161	chr8:64826426-64826427	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs77215586	chr8:64826428-64826429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs190056517	chr8:64826431-64826432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs117585890	chr8:64826442-64826443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs182545803	chr8:64826504-64826505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs75538669	chr8:64826575-64826576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs536948623	chr8:64826619-64826620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs117903968	chr8:64826657-64826658	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs199929630	chr8:64826713-64826714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs3073105	chr8:64826715-64826716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs374735444	chr8:64826773-64826774	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs138489644	chr8:64826794-64826795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs368049522	chr8:64826837-64826838	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs149234293	chr8:64826928-64826929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs571177604	chr8:64826957-64826958	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs576553213	chr8:64826961-64826962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs375509401	chr8:64826968-64826969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs200432755	chr8:64826970-64826971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs146194871	chr8:64827012-64827013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs375648271	chr8:64827013-64827014	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs558935693	chr8:64827031-64827032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs544256073	chr8:64827033-64827034	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs529599795	chr8:64827064-64827065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs541448513	chr8:64827065-64827066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs535052429	chr8:64827099-64827100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs563632714	chr8:64827200-64827201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs530692695	chr8:64827204-64827205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs186568951	chr8:64827235-64827236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs552369032	chr8:64827245-64827246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs564091627	chr8:64827312-64827313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs71529111	chr8:64827336-64827337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs547864417	chr8:64827382-64827383	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs191349453	chr8:64827437-64827438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs182714563	chr8:64827442-64827443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs28470645	chr8:64827444-64827445	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs559997541	chr8:64827450-64827451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs548274023	chr8:64827452-64827453	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs570356668	chr8:64827470-64827471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs528529805	chr8:64827512-64827513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs551873727	chr8:64827516-64827517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs565269855	chr8:64827556-64827557	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs79070812	chr8:64827594-64827595	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs530913947	chr8:64827626-64827627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs188972110	chr8:64827628-64827629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs534418371	chr8:64827697-64827698	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs552700124	chr8:64827757-64827758	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs371278766	chr8:64827763-64827764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs138476728	chr8:64827786-64827787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:95)

Disease	PMID	Source
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Ewing''s sarcoma	21437220	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Seminomas	18059402	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pancreatic cancer	21811587	CNVD
Thyroid cancer	19087340	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	17603634	CNVD
Disorders of sex development	21048976	CNVD
Testicular cancer	18059402	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17133270	CNVD
Breast cancer	21509527	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Cancer	20164919	CNVD
primary effusion lymphomas	17116491	CNVD
Esophageal cancer	20955586	CNVD
Multiple myeloma	16461302	CNVD
abnormal development	18461090	CNVD
Cancer	20164920	CNVD
Oral cancer	21386901	CNVD
Uveal melanoma	21693616	CNVD
Langer-Giedion syndrome	22283845	CNVD
Cancer	21637783	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	20632083	CNVD
Breast cancer	19602461	CNVD
Cancer	22429812	CNVD
Endometrial cancer	22040021	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oral cancer	19627613	CNVD
Prostate cancer	21088497	CNVD
colon cancer	17210682	CNVD
Breast cancer	21264507	CNVD
Breast cancer	22028636	CNVD
Acute myeloid leukemia	16864856	CNVD
Salivary gland tumor	18059337	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Gastric cancer	17167181	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	16461572	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
head and neck squamous cell carcinoma	18028549	CNVD
Breast cancer	17001317	CNVD
Ewing''s sarcoma	17952124	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	16608533	CNVD
Metanephric adenoma	20802469	CNVD
Hepatocellular carcinoma	18803288	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	18628472	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	16573809	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	22183965	CNVD
Cancer	21949371	CNVD
Non-small cell lung cancer	21829676	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Acute myeloid leukemia	21358987	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Adenocarcinoma	21044232	CNVD
Squamous cell cancer	20885788	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
small cell lung cancer	20016488	CNVD
Sezary syndrome	18413736	CNVD
Colorectal cancer	21645411	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64824000-64832000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:64832000-64832200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:64843000-64843400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:64849800-64850000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:64850000-64851000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links