Variant report
| Variant | nsv972604 |
|---|---|
| Chromosome Location | chr9:9816381-9822029 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs80152062 | chr9:9820066-9820067 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs149319750 | chr9:9820110-9820111 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs563910776 | chr9:9820165-9820166 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs75971064 | chr9:9820169-9820170 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs549725693 | chr9:9820177-9820178 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs568031857 | chr9:9820194-9820195 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs533850825 | chr9:9820196-9820197 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs547440821 | chr9:9820202-9820203 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs143624813 | chr9:9820241-9820242 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs576123458 | chr9:9820272-9820273 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs190236499 | chr9:9820273-9820274 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs549562963 | chr9:9820277-9820278 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs569543277 | chr9:9820278-9820279 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs555364992 | chr9:9820318-9820319 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs535349353 | chr9:9820372-9820373 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs12552705 | chr9:9820375-9820376 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs571965584 | chr9:9820391-9820392 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs2761758 | chr9:9820401-9820402 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 19 | rs10739200 | chr9:9820412-9820413 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 20 | rs76001700 | chr9:9820445-9820446 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs558188470 | chr9:9820467-9820468 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs371202995 | chr9:9820474-9820475 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs148033448 | chr9:9820488-9820489 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs182476654 | chr9:9820492-9820493 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs532957302 | chr9:9820498-9820499 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs185663678 | chr9:9820504-9820505 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs556261939 | chr9:9820509-9820510 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs574317568 | chr9:9820541-9820542 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs189389596 | chr9:9820570-9820571 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 30 | rs559816154 | chr9:9820616-9820617 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 31 | rs113276522 | chr9:9820623-9820624 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 32 | rs547069791 | chr9:9820632-9820633 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 33 | rs181016538 | chr9:9820635-9820636 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 34 | rs116367673 | chr9:9820703-9820704 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 35 | rs543630553 | chr9:9820736-9820737 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 36 | rs185695676 | chr9:9820763-9820764 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 37 | rs188693195 | chr9:9820773-9820774 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 38 | rs12336546 | chr9:9820811-9820812 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 39 | rs181469842 | chr9:9820817-9820818 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 40 | rs562806262 | chr9:9820885-9820886 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 41 | rs186167608 | chr9:9820952-9820953 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 42 | rs574429391 | chr9:9820985-9820986 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 43 | rs536173398 | chr9:9820995-9820996 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:113)
| Disease | PMID | Source |
|---|---|---|
| abnormal development | 18461090 | CNVD |
| Disorders of sex development | 21048976 | CNVD |
| Honadal dysgenesis | 21048976 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Lung cancer | 16740712 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Basal cell lymphoma | 17170743 | CNVD |
| Follicular lymphoma | 17170743 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Retinoblastoma | 22278416 | CNVD |
| Splenic marginal zone lymphoma | 18492102 | CNVD |
| Melanoma | 18172304 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| Gastric cancer | 21586687 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Myopathy | 18421352 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Acute lymphoblastic leukemia | 18957548 | CNVD |
| Myeloproliferative neoplasm | 17564968 | CNVD |
| Malignant meningioma | 17937814 | CNVD |
| Glioma | 21971842 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Cutaneous squamous cell carcinomas | 19131950 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Chordoma | 18071362 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Chordoma | 21602918 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Developmental delay | 19490664 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| microdeletion syndrome | 16199537 | CNVD |
| Non-syndromic sensorineural hearing loss | 21987784 | CNVD |
| Cancer | 20164919 | CNVD |
| Chronic myeloid leukemia | 21384125 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Lung cancer | 18438408 | CNVD |
| XY gonadal dysgenesis | 20685758 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Oral cancer | 21386901 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Esophageal adenocarcinoma | 19417022 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Myelodysplastic syndrome | 21251322 | CNVD |
| Autism | 22495311 | CNVD |
| Hepatocellular carcinoma | 18803288 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Glioblastoma | 19074898 | CNVD |
| Malignant melanoma | 19074898 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Ovarian clear cell carcinoma | 21343371 | CNVD |
| Cancer | 20164920 | CNVD |
| Lung cancer | 20668451 | CNVD |
| Schizophrenia | 20838587 | CNVD |
| Glioblastoma | 18772890 | CNVD |
| Glioblastoma multiforme | 21390271 | CNVD |
| Breast cancer | 20668451 | CNVD |
| Cancer | 20668451 | CNVD |
| Ovarian cancer | 20668451 | CNVD |
| Pancreas cancer | 20668451 | CNVD |
| Prostate cancer | 20668451 | CNVD |
| Autism | 20858261 | CNVD |
| Epilepsy | 20858261 | CNVD |
| Mental retardation | 20858261 | CNVD |
| Developmental delay | 21147756 | CNVD |
| small cell lung cancer | 21764851 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Glioma | 17123091 | CNVD |
| Lung cancer | 16773561 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Esophageal squamous carcinoma | 18405350 | CNVD |
| Gastric cancer | 16891809 | CNVD |
| Mental retardation | 17847001 | CNVD |
| Cutaneous squamous cell carcinomas | 17420988 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Pilocytic astrocytoma | 18670637 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Acute myeloid leukemia | 21251322 | CNVD |
| Lung adenocarcinoma | 17982442 | CNVD |
| Breast cancer | 21611746 | CNVD |
| Schizophrenia | 23813976 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:9820000-9821000 | Enhancers | NH-A | brain |
