Variant report

Variant	nsv972785
Chromosome Location	chr9:97107032-97110562
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:232573131..232573639-chr9:97109900..97110413,2	NB4	blood:
2	chr2:232573076..232573627-chr9:97109910..97110420,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000187514	chromatin interactions

Extended variants
information (count: 113 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:113 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs74436186	chr9:97107039-97107040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs532962649	chr9:97107045-97107046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs551489192	chr9:97107052-97107053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs566460438	chr9:97107065-97107066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs9409727	chr9:97107088-97107089	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs189193870	chr9:97107092-97107093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs192136427	chr9:97107108-97107109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs568173941	chr9:97107140-97107141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs538583936	chr9:97107165-97107166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs556555830	chr9:97107195-97107196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs62579692	chr9:97107209-97107210	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs374600055	chr9:97107213-97107214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs189779162	chr9:97107229-97107230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs545286280	chr9:97107241-97107242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs181264315	chr9:97107248-97107249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs186086003	chr9:97107255-97107256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs367583178	chr9:97107272-97107273	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs202132239	chr9:97107277-97107278	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs554311439	chr9:97107309-97107310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs572214023	chr9:97107338-97107339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs189360854	chr9:97107369-97107370	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs560990842	chr9:97107370-97107371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs531595834	chr9:97107426-97107427	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs544523846	chr9:97107437-97107438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs180754233	chr9:97107461-97107462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs562625897	chr9:97107467-97107468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs377281698	chr9:97107468-97107469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs370865019	chr9:97107488-97107489	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs374543245	chr9:97107643-97107644	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs59874279	chr9:97107727-97107728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs186475521	chr9:97107734-97107735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs149298427	chr9:97107743-97107744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs560349549	chr9:97107751-97107752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs527423776	chr9:97107763-97107764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs7389121	chr9:97107790-97107791	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs567296527	chr9:97107799-97107800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs370559997	chr9:97107803-97107804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs4744332	chr9:97107866-97107867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs199782140	chr9:97107906-97107907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs571866704	chr9:97107961-97107962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs190861697	chr9:97107987-97107988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs9409728	chr9:97108020-97108021	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs183204497	chr9:97108028-97108029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs555501065	chr9:97108064-97108065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs572298556	chr9:97108129-97108130	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs28372512	chr9:97108171-97108172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs372189995	chr9:97108256-97108257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs9409729	chr9:97108278-97108279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs536397235	chr9:97108281-97108282	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs554623561	chr9:97108344-97108345	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Bipolar disorder	18458673	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Biliary cancer	19435499	CNVD
small cell lung cancer	20016488	CNVD
Intracranial aneurysm	16715129	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Basal cell nevus syndrome	21572526	CNVD
Mental retardation	19951919	CNVD
Retinoblastoma	22278416	CNVD
9q22.3 microdeletion syndrome	22283845	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Microcephaly	18830227	CNVD
overgrowth syndrome	16570072	CNVD
Effusion lymphoma	18079361	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97098000-97109200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:97109200-97109800	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr9:97109200-97110200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:97109800-97110200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr9:97109800-97110200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr9:97110200-97110400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr9:97110400-97114000	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links