Variant report

Variant	nsv972796
Chromosome Location	chr9:105064676-105072765
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRIN3A-3	chr9:105066627-105066753	ucscGeneNc_uc004bbt_2
2	lnc-GRIN3A-3	chr9:105066627-105066753	NONHSAT133756
3	lnc-GRIN3A-3	chr9:105066714-105066751	NONHSAT133764

Extended variants
information (count: 60 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:60 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546642408	chr9:105066627-105066628	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs191393299	chr9:105070400-105070401	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs183228305	chr9:105070464-105070465	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs77561869	chr9:105070466-105070467	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs369514207	chr9:105070537-105070538	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs563506423	chr9:105070567-105070568	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs10989981	chr9:105071007-105071008	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs534292568	chr9:105071016-105071017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs367756808	chr9:105071026-105071027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs144704223	chr9:105071112-105071113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs375923742	chr9:105071115-105071116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs554552630	chr9:105071173-105071174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574604745	chr9:105071250-105071251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs373363107	chr9:105071257-105071258	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs117725680	chr9:105071269-105071270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs147010456	chr9:105071312-105071313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs148288922	chr9:105071325-105071326	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs377372316	chr9:105071352-105071353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs565342735	chr9:105071391-105071392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs572590442	chr9:105071434-105071435	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs376953331	chr9:105071550-105071551	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561328731	chr9:105071567-105071568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs4540456	chr9:105071592-105071593	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs530089716	chr9:105071603-105071604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs377654264	chr9:105071642-105071643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs187915657	chr9:105071651-105071652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs563863033	chr9:105071681-105071682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs143177486	chr9:105071725-105071726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs141438251	chr9:105071784-105071785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs113250978	chr9:105071823-105071824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs565390653	chr9:105071981-105071982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs9409366	chr9:105071984-105071985	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs562410828	chr9:105071993-105071994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs75321821	chr9:105072020-105072021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs574284658	chr9:105072038-105072039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs375932750	chr9:105072068-105072069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs568045254	chr9:105072081-105072082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs536674560	chr9:105072092-105072093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs113529507	chr9:105072093-105072094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs192822145	chr9:105072105-105072106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs7870695	chr9:105072144-105072145	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs79523621	chr9:105072154-105072155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs10989982	chr9:105072180-105072181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs528917735	chr9:105072230-105072231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs12002927	chr9:105072263-105072264	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs541515116	chr9:105072265-105072266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs372448434	chr9:105072316-105072317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs558190638	chr9:105072367-105072368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs139686084	chr9:105072370-105072371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs185291891	chr9:105072376-105072377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Neuroblastoma	20406844	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105070400-105070600	Enhancers	H1 Cell Line	embryonic stem cell
2	chr9:105071000-105072600	Weak transcription	H1 Cell Line	embryonic stem cell

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