Variant report

Variant	nsv972797
Chromosome Location	chr9:105967144-105968578
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:74559597..74561112-chr9:105966073..105968012,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYLC2-4	chr9:105966669-105967391	NONHSAT133773
2	lnc-CYLC2-4	chr9:105968111-105968844	NONHSAT133773
3	lnc-CYLC2-4	chr9:105967406-105967836	NONHSAT133773

Extended variants
information (count: 87 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:87 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1062252	chr9:105967149-105967150	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs2166930	chr9:105967162-105967163	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs545858519	chr9:105967164-105967165	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs559478866	chr9:105967179-105967180	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
5	rs528228727	chr9:105967206-105967207	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs200512820	chr9:105967207-105967208	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs111673696	chr9:105967218-105967219	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs182967923	chr9:105967231-105967232	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs529861031	chr9:105967234-105967235	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs140032433	chr9:105967260-105967261	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs115647825	chr9:105967268-105967269	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs570331166	chr9:105967275-105967276	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs548334899	chr9:105967283-105967284	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs141916859	chr9:105967301-105967302	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs186235717	chr9:105967328-105967329	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs7019312	chr9:105967355-105967356	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs9775845	chr9:105967358-105967359	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs139331673	chr9:105967388-105967389	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs190706974	chr9:105967405-105967406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs150007437	chr9:105967406-105967407	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs372582982	chr9:105967466-105967467	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs556975981	chr9:105967471-105967472	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs12686368	chr9:105967507-105967508	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs9776884	chr9:105967510-105967511	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs7019564	chr9:105967514-105967515	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs9776014	chr9:105967516-105967517	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs572895572	chr9:105967517-105967518	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs35538261	chr9:105967537-105967538	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs112657977	chr9:105967546-105967547	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs201914380	chr9:105967589-105967590	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs552631428	chr9:105967590-105967591	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
32	rs150461882	chr9:105967591-105967592	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
33	rs541911283	chr9:105967596-105967597	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs36019477	chr9:105967597-105967598	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs201358347	chr9:105967599-105967600	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs199914504	chr9:105967600-105967601	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs372694647	chr9:105967661-105967662	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs530186635	chr9:105967712-105967713	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs34423454	chr9:105967713-105967714	Weak transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs539968421	chr9:105967746-105967747	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs532696024	chr9:105967754-105967755	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs373870715	chr9:105967765-105967766	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs552474830	chr9:105967838-105967839	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs565704951	chr9:105967845-105967846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs143469305	chr9:105967852-105967853	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs548349030	chr9:105967863-105967864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs375334482	chr9:105967879-105967880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs568590581	chr9:105967885-105967886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs536840942	chr9:105967910-105967911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs375169791	chr9:105967914-105967915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105966200-105970600	Weak transcription	Aorta	Aorta

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