Variant report

Variant	nsv972917
Chromosome Location	chr11:26104722-26110818
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 278 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:278 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs185946223	chr11:26104761-26104762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs373534112	chr11:26104764-26104765	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs544192539	chr11:26104835-26104836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs562604435	chr11:26104857-26104858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs11029149	chr11:26104878-26104879	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs552713998	chr11:26104888-26104889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs147741770	chr11:26104894-26104895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs11029150	chr11:26104913-26104914	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs369913696	chr11:26104926-26104927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs527451253	chr11:26104947-26104948	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs11029151	chr11:26104986-26104987	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs73435421	chr11:26104998-26104999	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs531614371	chr11:26105049-26105050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs11029152	chr11:26105056-26105057	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs11029153	chr11:26105064-26105065	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs538745589	chr11:26105086-26105087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs190716089	chr11:26105087-26105088	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs142375510	chr11:26105128-26105129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs117003538	chr11:26105131-26105132	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs555258820	chr11:26105140-26105141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs118050510	chr11:26105150-26105151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs182002867	chr11:26105152-26105153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs11029154	chr11:26105168-26105169	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs11029155	chr11:26105175-26105176	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs34119619	chr11:26105180-26105181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs533782863	chr11:26105185-26105186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs186424602	chr11:26105214-26105215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs558346517	chr11:26105215-26105216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs111334479	chr11:26105234-26105235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs377284974	chr11:26105246-26105247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs151236856	chr11:26105256-26105257	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs140505088	chr11:26105269-26105270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs537554367	chr11:26105291-26105292	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs531482524	chr11:26105292-26105293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs372625476	chr11:26105374-26105375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs114553889	chr11:26105474-26105475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs565601634	chr11:26105494-26105495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs532206706	chr11:26105495-26105496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs11029156	chr11:26105526-26105527	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs11029157	chr11:26105529-26105530	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs574392773	chr11:26105596-26105597	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs113837982	chr11:26105620-26105621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs376080638	chr11:26105621-26105622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs375729736	chr11:26105622-26105623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372128520	chr11:26105623-26105624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs547873980	chr11:26105625-26105626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs117738781	chr11:26105630-26105631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs11029158	chr11:26105639-26105640	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs138700704	chr11:26105686-26105687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs546144455	chr11:26105687-26105688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Schizophrenia	23813976	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Neuroticism	17667963	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26101200-26109200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26101400-26112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:26102000-26106200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26102200-26109600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:26102400-26106400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:26105200-26106000	Weak transcription	GM12878-XiMat	blood
7	chr11:26106000-26106400	Enhancers	GM12878-XiMat	blood
8	chr11:26106200-26108200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:26106400-26106800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:26106400-26107400	Weak transcription	GM12878-XiMat	blood
11	chr11:26106800-26107000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:26106800-26109400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:26107000-26108800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:26107200-26108800	Enhancers	Primary B cells from cord blood	blood
15	chr11:26107400-26107600	Enhancers	GM12878-XiMat	blood
16	chr11:26107400-26108800	Enhancers	Primary B cells from peripheral blood	blood
17	chr11:26107600-26108600	Flanking Active TSS	GM12878-XiMat	blood
18	chr11:26107800-26109200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:26108200-26108600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:26108600-26109000	Active TSS	GM12878-XiMat	blood
21	chr11:26108600-26109800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:26108800-26109200	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr11:26108800-26109200	Flanking Active TSS	Primary B cells from peripheral blood	blood
24	chr11:26108800-26109400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:26109000-26109800	Flanking Active TSS	GM12878-XiMat	blood
26	chr11:26109200-26109800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:26109200-26110600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:26109200-26110600	Enhancers	Hela-S3	cervix
29	chr11:26109200-26111200	Enhancers	Primary B cells from cord blood	blood
30	chr11:26109200-26111800	Enhancers	Primary B cells from peripheral blood	blood
31	chr11:26109400-26109800	Enhancers	NHEK	skin
32	chr11:26109400-26110600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:26109400-26110600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:26109400-26110800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:26109400-26111400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr11:26109600-26110400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:26109600-26110400	Enhancers	NHDF-Ad	bronchial
38	chr11:26109800-26110600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:26109800-26110600	Enhancers	GM12878-XiMat	blood
40	chr11:26109800-26110800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:26110400-26112400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:26110600-26110800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:26110800-26111000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:26110800-26112800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links