Variant report

Variant	nsv973081
Chromosome Location	chr12:63923270-63953468
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 965 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:965 , 50 per page) page: 1 2 3 4 5 6 7 ... 20

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs148165322	chr12:63926420-63926421	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs142540202	chr12:63926516-63926517	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs530099213	chr12:63926517-63926518	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs187697842	chr12:63926520-63926521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs66683103	chr12:63926550-63926551	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs113005394	chr12:63926551-63926552	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs573048977	chr12:63926564-63926565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs35907830	chr12:63926565-63926566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs71086676	chr12:63926584-63926585	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs538818126	chr12:63931868-63931869	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs55692287	chr12:63931879-63931880	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs566064004	chr12:63931945-63931946	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs12319490	chr12:63931951-63931952	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs573024439	chr12:63932008-63932009	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs537854336	chr12:63932036-63932037	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs56218370	chr12:63932044-63932045	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs541040637	chr12:63932051-63932052	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs117418434	chr12:63932062-63932063	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs574765762	chr12:63932066-63932067	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs543509918	chr12:63932079-63932080	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs545193586	chr12:63932099-63932100	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs563583070	chr12:63932100-63932101	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs532725680	chr12:63932126-63932127	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs552624973	chr12:63932130-63932131	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs543561892	chr12:63932141-63932142	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs187424575	chr12:63932171-63932172	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs145237356	chr12:63932198-63932199	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs548217576	chr12:63932202-63932203	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs568014102	chr12:63932242-63932243	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs368561414	chr12:63932278-63932279	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs2257662	chr12:63932323-63932324	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs2647728	chr12:63932344-63932345	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs145105701	chr12:63932355-63932356	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs576173490	chr12:63932362-63932363	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs552855958	chr12:63932385-63932386	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs565087322	chr12:63932390-63932391	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs3863368	chr12:63932392-63932393	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs545259331	chr12:63932393-63932394	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs4044441	chr12:63932399-63932400	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs535316241	chr12:63932436-63932437	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs2659936	chr12:63932448-63932449	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs554588620	chr12:63932449-63932450	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs574486394	chr12:63932450-63932451	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs2814421	chr12:63932461-63932462	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs3863369	chr12:63932482-63932483	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs2659935	chr12:63932483-63932484	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs543548402	chr12:63932488-63932489	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs191811894	chr12:63932532-63932533	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs577241229	chr12:63932546-63932547	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs546393876	chr12:63932578-63932579	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Neurodevelopmental disorder	22521361	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Renal cell carcinoma	18194544	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lissencephaly	21572526	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Glioblastoma multiforme	17387387	CNVD
liposarcomas	17372913	CNVD
Non-small cell lung cancer	24170126	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	21785460	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Leukemia	18628472	CNVD
Phyllodes tumor	17334353	CNVD
Glaucoma	21310917	CNVD
Breast cancer	16272173	CNVD
Mental retardation	19951919	CNVD
Glaucoma	21447600	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Developmental delay	21267005	CNVD
12q14 microdeletion syndrome	21267005	CNVD
Developmental delay	19277063	CNVD
Dwarfism	19277063	CNVD
Fibroblasts	20926602	CNVD
Metanephric adenoma	20802469	CNVD
Follicular lymphoma	18703704	CNVD
Acute myeloid leukemia	21251322	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Multiple myeloma	16616336	CNVD
Lung cancer	16773561	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Breast cancer	21364760	CNVD
Mental retardation	17220210	CNVD
Osteopoikilosis	17220210	CNVD
short stature	17220210	CNVD
Burkitt''s lymphoma	20823134	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Heart disease	21282601	CNVD
Ovarian neoplasms	16753589	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Breast cancer	16620391	CNVD

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63926400-63926600	Enhancers	Right Atrium	heart
2	chr12:63931800-63932000	Enhancers	Fetal Brain Male	brain
3	chr12:63931800-63932400	Enhancers	HSMMtube	muscle
4	chr12:63931800-63933200	Enhancers	Fetal Heart	heart
5	chr12:63932000-63938800	Weak transcription	Fetal Brain Male	brain
6	chr12:63938800-63939200	Enhancers	Fetal Brain Male	brain
7	chr12:63942400-63943800	Enhancers	Fetal Heart	heart
8	chr12:63943800-63969400	Weak transcription	Fetal Heart	heart

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