Variant report

Variant	nsv973275
Chromosome Location	chr9:44074939-44080797
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM75A6-8	chr9:44075932-44076173	NONHSAT131372

Extended variants
information (count: 363 )
Associated
traits (count: 67 )

Variant overlapped rSNPs/rCNVs (count:363 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs62537399	chr9:44074948-44074949	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs189872889	chr9:44074954-44074955	Weak transcription	n/a	n/a	Overlapped CNVs	mRNA abundance
3	rs532500879	chr9:44074965-44074966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs62537400	chr9:44074981-44074982	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
5	rs377516929	chr9:44074985-44074986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs530115432	chr9:44074988-44074989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs548684178	chr9:44074992-44074993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs201280098	chr9:44074998-44074999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs567313242	chr9:44075007-44075008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs538052826	chr9:44075008-44075009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs369024689	chr9:44075038-44075039	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs199807322	chr9:44075063-44075064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs200397607	chr9:44075077-44075078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs571202485	chr9:44075092-44075093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs201377143	chr9:44075108-44075109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs199508469	chr9:44075140-44075141	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs371202818	chr9:44075149-44075150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs143519424	chr9:44075171-44075172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs553333634	chr9:44075174-44075175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs188160615	chr9:44075185-44075186	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs535934431	chr9:44075215-44075216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs147176333	chr9:44075217-44075218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547698236	chr9:44075222-44075223	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs371313949	chr9:44075226-44075227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs201214675	chr9:44075228-44075229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs543994106	chr9:44075239-44075240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs561097728	chr9:44075260-44075261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs530121843	chr9:44075265-44075266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs80094954	chr9:44075298-44075299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs577597053	chr9:44075305-44075306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs199595182	chr9:44075316-44075317	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs74891317	chr9:44075355-44075356	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs200572369	chr9:44075358-44075359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs191380586	chr9:44075364-44075365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs530122015	chr9:44075371-44075372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs548351158	chr9:44075373-44075374	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs563804378	chr9:44075388-44075389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs375000369	chr9:44075390-44075391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs530952874	chr9:44075394-44075395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs183573214	chr9:44075398-44075399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs187299046	chr9:44075408-44075409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs74433873	chr9:44075412-44075413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs62537401	chr9:44075432-44075433	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
44	rs547306689	chr9:44075437-44075438	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs145132315	chr9:44075439-44075440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs201409977	chr9:44075442-44075443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs199896084	chr9:44075449-44075450	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs369723955	chr9:44075454-44075455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs184763210	chr9:44075455-44075456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs536249074	chr9:44075456-44075457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:67)

Disease	PMID	Source
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Melanoma	18172304	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	22183965	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Oral cancer	21386901	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21509527	CNVD
Sezary syndrome	18413736	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	21346763	CNVD
Breast cancer	21990379	CNVD
Astrocytoma	22246337	CNVD
Lung adenocarcinoma	17086460	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Lung cancer	17086460	CNVD
Rhabdomyosarcoma	16790082	CNVD
Schizophrenia	20967226	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:44071000-44092000	Weak transcription	Liver	Liver

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