Variant report
Variant | nsv973279 |
---|---|
Chromosome Location | chr9:44100558-44101518 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs568503704 | chr9:44100559-44100560 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs140298997 | chr9:44100579-44100580 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs554496344 | chr9:44100617-44100618 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs569937850 | chr9:44100650-44100651 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs145020559 | chr9:44100652-44100653 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs558541651 | chr9:44100653-44100654 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs111234241 | chr9:44100668-44100669 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs370925249 | chr9:44100688-44100689 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs181472735 | chr9:44100706-44100707 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs200311810 | chr9:44100710-44100711 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs76638511 | chr9:44100730-44100731 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs553016246 | chr9:44100732-44100733 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs62538306 | chr9:44100746-44100747 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | mRNA abundance |
14 | rs542378160 | chr9:44100753-44100754 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs563743320 | chr9:44100758-44100759 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs531072155 | chr9:44100761-44100762 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs546094379 | chr9:44100775-44100776 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs564489501 | chr9:44100796-44100797 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs528459877 | chr9:44100802-44100803 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs546712448 | chr9:44100808-44100809 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs568520972 | chr9:44100856-44100857 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs71493019 | chr9:44100860-44100861 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs548324881 | chr9:44100862-44100863 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs112451287 | chr9:44100873-44100874 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs569868632 | chr9:44100885-44100886 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs560198298 | chr9:44100886-44100887 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs537288754 | chr9:44100957-44100958 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs149111465 | chr9:44100964-44100965 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs542405972 | chr9:44100982-44100983 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs370734363 | chr9:44100998-44100999 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs143207905 | chr9:44101002-44101003 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs186451808 | chr9:44101033-44101034 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs552712985 | chr9:44101063-44101064 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs200224624 | chr9:44101073-44101074 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs574436237 | chr9:44101290-44101291 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs541572941 | chr9:44101334-44101335 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs148276001 | chr9:44101351-44101352 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs375801893 | chr9:44101383-44101384 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs575432782 | chr9:44101385-44101386 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs113463487 | chr9:44101438-44101439 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Gastric cancer | 21586687 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Myopathy | 18421352 | CNVD |
Neuroblastoma | 18664255 | CNVD |
Acute lymphoblastic leukemia | 18957548 | CNVD |
Myeloproliferative neoplasm | 17564968 | CNVD |
Malignant meningioma | 17937814 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Glioma | 21971842 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Melanoma | 18172304 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Astrocytoma | 17387387 | CNVD |
Breast cancer | 17603634 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
Cutaneous squamous cell carcinomas | 19131950 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17133270 | CNVD |
Chordoma | 18071362 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Chordoma | 21602918 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
Developmental delay | 19490664 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
microdeletion syndrome | 16199537 | CNVD |
Cancer | 20164919 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Renal cell carcinoma | 21668985 | CNVD |
Autism | 22495311 | CNVD |
Melanoma | 22183965 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Acute lymphoblastic leukemia | 21098271 | CNVD |
Cancer | 16751803 | CNVD |
Myelofibrosis | 22110671 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Non-syndromic sensorineural hearing loss | 17289997 | CNVD |
Oral cancer | 21386901 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21509527 | CNVD |
Sezary syndrome | 18413736 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Schizophrenia | 21346763 | CNVD |
Breast cancer | 21990379 | CNVD |
Astrocytoma | 22246337 | CNVD |
Lung adenocarcinoma | 17086460 | CNVD |
Barrett''s adenocarcinoma | 18663352 | CNVD |
Lung cancer | 17086460 | CNVD |
Rhabdomyosarcoma | 16790082 | CNVD |
Schizophrenia | 20967226 | CNVD |
Schizophrenia | 23813976 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:44093400-44109800 | Weak transcription | Liver | Liver |