Variant report

Variant	nsv973442
Chromosome Location	chr9:26136362-26146717
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 183 )
Associated
traits (count: 116 )

Variant overlapped rSNPs/rCNVs (count:183 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs574801604	chr9:26136369-26136370	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs541973527	chr9:26136389-26136390	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs560310135	chr9:26136400-26136401	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs527930183	chr9:26136490-26136491	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs142221358	chr9:26136536-26136537	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs188150675	chr9:26136538-26136539	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs531986168	chr9:26136558-26136559	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs576355679	chr9:26136565-26136566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs146203973	chr9:26136584-26136585	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs73645310	chr9:26136585-26136586	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs148237119	chr9:26136599-26136600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs79488137	chr9:26136609-26136610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs577906577	chr9:26136630-26136631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs566539963	chr9:26136640-26136641	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs534026194	chr9:26136655-26136656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs368208176	chr9:26136702-26136703	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs558760036	chr9:26136715-26136716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs543680746	chr9:26136719-26136720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs570944478	chr9:26136759-26136760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs537808706	chr9:26136845-26136846	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs73433643	chr9:26136861-26136862	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs2250791	chr9:26136894-26136895	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs577323189	chr9:26136901-26136902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs535737705	chr9:26136936-26136937	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs141278365	chr9:26136937-26136938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs182740273	chr9:26136968-26136969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs546401977	chr9:26137092-26137093	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs187368189	chr9:26137130-26137131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs576878720	chr9:26137141-26137142	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs544178178	chr9:26137151-26137152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs150845105	chr9:26137179-26137180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs114251424	chr9:26137200-26137201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs80322875	chr9:26137202-26137203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs10733406	chr9:26137224-26137225	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs373446903	chr9:26137289-26137290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs560424237	chr9:26137295-26137296	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs530210620	chr9:26137309-26137310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs548638277	chr9:26137364-26137365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs527465432	chr9:26137393-26137394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs542898786	chr9:26137445-26137446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs570811039	chr9:26137453-26137454	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs57828380	chr9:26137485-26137486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs537946977	chr9:26137501-26137502	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs549902972	chr9:26137518-26137519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs114209591	chr9:26137559-26137560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs372359782	chr9:26137561-26137562	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs192473137	chr9:26137572-26137573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138241038	chr9:26137585-26137586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs554144613	chr9:26137614-26137615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs572716810	chr9:26137629-26137630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:116)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26134600-26136600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:26136000-26136400	Weak transcription	Adipose Nuclei	Adipose
3	chr9:26136400-26136600	Enhancers	Adipose Nuclei	Adipose
4	chr9:26136600-26138200	Weak transcription	Adipose Nuclei	Adipose
5	chr9:26137800-26138400	Active TSS	A549	lung
6	chr9:26138200-26138400	Enhancers	Adipose Nuclei	Adipose
7	chr9:26141800-26142200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:26144400-26152200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:26145600-26146200	Active TSS	A549	lung

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