Variant report

Variant	nsv973829
Chromosome Location	chr9:115856827-115862572
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115856198..115858417-chr9:115859044..115860820,2	MCF-7	breast:
2	chr9:115856198..115858417-chr9:115859044..115860820,2	MCF-7	breast:
3	chr9:115853301..115854826-chr9:115855514..115857498,2	K562	blood:
4	chr9:115857627..115859228-chr9:115862947..115865941,2	MCF-7	breast:

Extended variants
information (count: 195 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:195 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs557006667	chr9:115856882-115856883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs148444457	chr9:115856885-115856886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs193135546	chr9:115856963-115856964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs552897895	chr9:115856973-115856974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs572611945	chr9:115856997-115856998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs372625706	chr9:115857025-115857026	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs142611385	chr9:115857026-115857027	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs185253756	chr9:115857073-115857074	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs536314835	chr9:115857081-115857082	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs151022381	chr9:115857100-115857101	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs111969135	chr9:115857126-115857127	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs190179169	chr9:115857172-115857173	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs7867399	chr9:115857242-115857243	ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs540279744	chr9:115857261-115857262	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs117731753	chr9:115857333-115857334	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs141091348	chr9:115857351-115857352	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs552748176	chr9:115857425-115857426	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs34063470	chr9:115857428-115857429	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs569360829	chr9:115857437-115857438	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs537509779	chr9:115857444-115857445	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs7862649	chr9:115857449-115857450	ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs567466822	chr9:115857477-115857478	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs77562534	chr9:115857518-115857519	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs7862552	chr9:115857526-115857527	ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs181084434	chr9:115857542-115857543	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs143203289	chr9:115857558-115857559	ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs34161189	chr9:115857663-115857664	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs368296098	chr9:115857678-115857679	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs564018625	chr9:115857730-115857731	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs541343325	chr9:115857802-115857803	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs538070536	chr9:115857806-115857807	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs555103288	chr9:115857877-115857878	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs117368068	chr9:115857883-115857884	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs372874298	chr9:115857890-115857891	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs540965981	chr9:115857907-115857908	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs113179878	chr9:115857929-115857930	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs573047368	chr9:115857935-115857936	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs77025358	chr9:115858071-115858072	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs367823325	chr9:115858088-115858089	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs577347759	chr9:115858115-115858116	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs556889477	chr9:115858127-115858128	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs546200555	chr9:115858128-115858129	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs562994385	chr9:115858129-115858130	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs531798737	chr9:115858211-115858212	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs575013216	chr9:115858248-115858249	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs185735118	chr9:115858264-115858265	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs561091308	chr9:115858315-115858316	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs529846236	chr9:115858336-115858337	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs188151599	chr9:115858340-115858341	Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs1888282	chr9:115858373-115858374	Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Lung cancer	19147751	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115855600-115857200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr9:115857000-115857600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:115857200-115858400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:115858400-115859000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:115858800-115859000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:115858800-115859000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
7	chr9:115858800-115859000	Enhancers	Gastric	stomach
8	chr9:115859000-115861800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:115859000-115862400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:115861600-115874000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:115861800-115862400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:115862400-115862600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:115862400-115862800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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