Variant report

Variant	nsv973868
Chromosome Location	chr9:105763845-105769544
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:105763617-105763909	HepG2	liver:	n/a	chr9:105763745-105763756 chr9:105763746-105763757 chr9:105763745-105763758
2	CEBPB	chr9:105766014-105766333	K562	blood:	n/a	chr9:105766167-105766176 chr9:105766167-105766176 chr9:105766167-105766176 chr9:105766165-105766176 chr9:105766165-105766178
3	CEBPB	chr9:105765994-105766337	H1-hESC	embryonic stem cell:	n/a	chr9:105766167-105766176 chr9:105766167-105766176 chr9:105766167-105766176 chr9:105766165-105766176 chr9:105766165-105766178
4	CEBPB	chr9:105763606-105763848	A549	lung:	n/a	chr9:105763745-105763756 chr9:105763746-105763757 chr9:105763745-105763758
5	CEBPB	chr9:105765985-105766350	A549	lung:	n/a	chr9:105766167-105766176 chr9:105766167-105766176 chr9:105766167-105766176 chr9:105766165-105766176 chr9:105766165-105766178
6	CEBPB	chr9:105765986-105766361	HepG2	liver:	n/a	chr9:105766167-105766176 chr9:105766167-105766176 chr9:105766167-105766176 chr9:105766165-105766176 chr9:105766165-105766178
7	CEBPB	chr9:105765984-105766352	IMR90	lung:	n/a	chr9:105766167-105766176 chr9:105766167-105766176 chr9:105766167-105766176 chr9:105766165-105766176 chr9:105766165-105766178
8	FOS	chr9:105766118-105766160	MCF10A-Er-Src	breast:	n/a	chr9:105766140-105766151
9	FOS	chr9:105766110-105766203	MCF10A-Er-Src	breast:	n/a	chr9:105766140-105766151
10	POLR2A	chr9:105767444-105767644	MCF10A-Er-Src	breast:	n/a	n/a
11	STAT3	chr9:105765807-105766154	MCF10A-Er-Src	breast:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:105764606-105764656	HEEpiC	esophagus:	n/a
2	chr9:105764606-105764656	HepG2	liver:	n/a
3	chr9:105764606-105764656	PANC-1	pancreas:	n/a
4	chr9:105764606-105764656	T-47D	breast:	n/a
5	chr9:105764606-105764656	SAEC	small airway:	n/a
6	chr9:105764606-105764656	HPAEpiC	pulmonary alveolar:	n/a
7	chr9:105764606-105764656	AG04449	skin:	fetal
8	chr9:105764606-105764656	ovcar-3	ovarian:	n/a
9	chr9:105764606-105764656	Hepatocyte	liver:	n/a
10	chr9:105764606-105764656	HCM	heart:	n/a
11	chr9:105764606-105764656	NT2-D1	testis:	n/a
12	chr9:105764606-105764656	GM12892	blood:	n/a
13	chr9:105764606-105764656	RPTEC	kidney:	n/a
14	chr9:105764606-105764656	AG09319	gingival:	n/a
15	chr9:105764606-105764656	HRCEpiC	kidney:	n/a
16	chr9:105764606-105764656	AoSMC	blood vessel:	n/a
17	chr9:105764606-105764656	MCF-7	breast:	n/a
18	chr9:105764606-105764656	HMEC	breast:	n/a
19	chr9:105764606-105764656	GM12878	blood:	n/a
20	chr9:105764606-105764656	GM12891	blood:	n/a
21	chr9:105764606-105764656	Hela-S3	cervix:	n/a
22	chr9:105764606-105764656	ProgFib	skin:	n/a
23	chr9:105764606-105764656	IMR90	lung:	fetal
24	chr9:105764606-105764656	K562	blood:	n/a
25	chr9:105764606-105764656	HIPEpiC	eye:	n/a
26	chr9:105764606-105764656	BE2_C	brain:	n/a
27	chr9:105764606-105764656	GM19239	blood:	n/a
28	chr9:105764606-105764656	AG04450	lung:	fetal
29	chr9:105764606-105764656	SKMC	muscle:	n/a
30	chr9:105764606-105764656	A549	lung:	n/a
31	chr9:105764606-105764656	NB4	blood:	n/a
32	chr9:105764606-105764656	GM06990	blood:	n/a
33	chr9:105764606-105764656	HCF	heart:	n/a
34	chr9:105764606-105764656	MCF10A-Er-Src	breast:	n/a
35	chr9:105764606-105764656	PFSK-1	brain:	n/a
36	chr9:105764606-105764656	AG09309	skin:	n/a
37	chr9:105764606-105764656	CMK	blood:	n/a
38	chr9:105764606-105764656	HCPEpiC	choroid plexus:	n/a
39	chr9:105764606-105764656	Jurkat	blood:	n/a
40	chr9:105764606-105764656	AG10803	skin:	n/a
41	chr9:105764606-105764656	H1-hESC	embryonic stem cell:	embryo
42	chr9:105764606-105764656	PrEC	prostate:	n/a
43	chr9:105764606-105764656	Caco-2	colon:	n/a
44	chr9:105764606-105764656	HNPCEpiC	eye:	n/a
45	chr9:105764606-105764656	SK-N-MC	brain:	n/a
46	chr9:105764606-105764656	HAEpiC	amniotic membrane:	n/a
47	chr9:105764606-105764656	HEK293	kidney:	embryo
48	chr9:105764606-105764656	HUVEC	blood vessel:	n/a
49	chr9:105764606-105764656	HRE	kidney:	n/a
50	chr9:105764606-105764656	HRPEpiC	eye:	n/a

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	CYLC2	hsa-miR-26b-5p	chr9:105768164-105768186

Variant related genes	Relation type
CYLC2	TF binding region
CYLC2	CpG island

Extended variants
information (count: 1 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs16922390	chr9:105768172-105768173	Inactive region	miRNA target site	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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