Variant report

Variant	nsv973952
Chromosome Location	chr12:74174271-74188960
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNC2-9	chr12:74174310-74176146	predAs_engstrom06_BX350135_1

Extended variants
information (count: 63 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:63 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs557880455	chr12:74174381-74174382	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs11179796	chr12:74174426-74174427	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs372959586	chr12:74174453-74174454	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs150264849	chr12:74174472-74174473	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs66506152	chr12:74174473-74174474	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs571241110	chr12:74174480-74174481	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs554874162	chr12:74174518-74174519	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs574242218	chr12:74174523-74174524	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs530750755	chr12:74174559-74174560	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs74967735	chr12:74174634-74174635	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs577618608	chr12:74174654-74174655	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs567559001	chr12:74174722-74174723	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs576970451	chr12:74174723-74174724	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs182695064	chr12:74174762-74174763	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs552842718	chr12:74174771-74174772	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs566555186	chr12:74174791-74174792	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs144946453	chr12:74174842-74174843	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs148989135	chr12:74174885-74174886	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs143756724	chr12:74174908-74174909	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs544794828	chr12:74174911-74174912	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs539851852	chr12:74174928-74174929	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs574968577	chr12:74174960-74174961	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs151120846	chr12:74175012-74175013	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs560747823	chr12:74175028-74175029	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs528129481	chr12:74175117-74175118	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs2053373	chr12:74175186-74175187	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs565015803	chr12:74175200-74175201	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs144628835	chr12:74175296-74175297	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs148852044	chr12:74175300-74175301	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs11179798	chr12:74175303-74175304	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs78047663	chr12:74175316-74175317	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs77248915	chr12:74175429-74175430	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs76458994	chr12:74175445-74175446	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs566394203	chr12:74175501-74175502	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs531383064	chr12:74175520-74175521	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs538668799	chr12:74175524-74175525	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs67391772	chr12:74175535-74175536	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs569344173	chr12:74175537-74175538	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs565296767	chr12:74175538-74175539	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs377001603	chr12:74175544-74175545	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs575116981	chr12:74175585-74175586	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs534378289	chr12:74175627-74175628	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs76622535	chr12:74175660-74175661	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs554524305	chr12:74175680-74175681	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs114092998	chr12:74175728-74175729	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs527631036	chr12:74175747-74175748	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs186685620	chr12:74175749-74175750	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs564766213	chr12:74175773-74175774	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs575171578	chr12:74175793-74175794	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs189919169	chr12:74175807-74175808	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Neurodevelopmental disorder	22521361	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17899364	CNVD
Colorectal cancer	16272173	CNVD
Cancer	16751803	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Burkitt''s lymphoma	20823134	CNVD
abnormal development	18461090	CNVD
Prostate cancer	18632612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
craniofacial dysmorphism	21918468	CNVD
Breast cancer	21364760	CNVD
Breast cancer	17133270	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	22032731	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Urothelial cell carcinoma	18451213	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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