Variant report

Variant	nsv974579
Chromosome Location	chr15:53807455-53810728
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR72-2	chr15:53805938-53809951	NONHSAT043966
2	lnc-WDR72-2	chr15:53805938-53809951	NONHSAT043967

Extended variants
information (count: 137 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:137 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs149624813	chr15:53807473-53807474	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
2	rs536634979	chr15:53807506-53807507	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
3	rs556852478	chr15:53807539-53807540	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
4	rs3088091	chr15:53807540-53807541	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs187272923	chr15:53807557-53807558	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
6	rs553548596	chr15:53807571-53807572	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
7	rs573632018	chr15:53807595-53807596	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
8	rs542885153	chr15:53807681-53807682	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
9	rs373985050	chr15:53807682-53807683	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
10	rs568861744	chr15:53807685-53807686	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
11	rs556155906	chr15:53807687-53807688	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
12	rs112052227	chr15:53807704-53807705	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
13	rs144316291	chr15:53807753-53807754	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
14	rs181649875	chr15:53807784-53807785	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
15	rs74015391	chr15:53807815-53807816	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
16	rs186788266	chr15:53807843-53807844	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
17	rs561453499	chr15:53807846-53807847	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
18	rs191235818	chr15:53807848-53807849	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
19	rs550474727	chr15:53807852-53807853	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
20	rs374169579	chr15:53807864-53807865	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
21	rs570222318	chr15:53807895-53807896	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
22	rs148744855	chr15:53807960-53807961	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
23	rs7180991	chr15:53807964-53807965	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs182668266	chr15:53807972-53807973	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
25	rs7181293	chr15:53807998-53807999	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs553577154	chr15:53808002-53808003	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
27	rs143667387	chr15:53808030-53808031	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
28	rs572582132	chr15:53808043-53808044	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
29	rs556431187	chr15:53808089-53808090	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
30	rs576208075	chr15:53808132-53808133	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
31	rs8041208	chr15:53808157-53808158	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs72745124	chr15:53808162-53808163	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs146307304	chr15:53808193-53808194	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs10518724	chr15:53808232-53808233	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs372180213	chr15:53808258-53808259	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs561342225	chr15:53808347-53808348	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs7182198	chr15:53808363-53808364	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs543611189	chr15:53808369-53808370	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs76317515	chr15:53808418-53808419	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs373730838	chr15:53808517-53808518	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs532693194	chr15:53808538-53808539	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
42	rs372471720	chr15:53808546-53808547	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
43	rs375448359	chr15:53808555-53808556	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
44	rs187320015	chr15:53808576-53808577	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
45	rs527264986	chr15:53808580-53808581	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
46	rs3206109	chr15:53808584-53808585	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
47	rs547105942	chr15:53808610-53808611	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
48	rs189761313	chr15:53808614-53808615	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a
49	rs3206108	chr15:53808617-53808618	Weak transcription Strong transcription	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs549704607	chr15:53808627-53808628	Weak transcription Strong transcription	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53802000-53828000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:53804200-53821600	Weak transcription	A549	lung
3	chr15:53806400-53810800	Weak transcription	Liver	Liver
4	chr15:53806800-53810000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:53807200-53812000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:53810000-53814200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links