Variant report

Variant	nsv974583
Chromosome Location	chr15:58979010-58987450
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58982751..58984795-chr15:59030172..59031707,2	K562	blood:
2	chr15:58980214..58981902-chr15:58985370..58987156,2	K562	blood:
3	chr15:58980214..58981902-chr15:58985370..58987156,2	K562	blood:
4	chr15:58985652..58987532-chr15:59040716..59043625,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLTM-6	chr15:58982672-58985806	NR_073415

Variant related genes	Relation type
ENSG00000137845	chromatin interactions

Extended variants
information (count: 361 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:361 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537224101	chr15:58979099-58979100	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs551797734	chr15:58979103-58979104	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs571598728	chr15:58979109-58979110	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs527925456	chr15:58979112-58979113	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs547563865	chr15:58979147-58979148	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs567453958	chr15:58979197-58979198	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs536361153	chr15:58979229-58979230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs376335404	chr15:58979245-58979246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs77736868	chr15:58979266-58979267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs55830436	chr15:58979304-58979305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs569951615	chr15:58979328-58979329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs188388310	chr15:58979331-58979332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs558627818	chr15:58979335-58979336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs572350579	chr15:58979399-58979400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs541264094	chr15:58979412-58979413	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs554821063	chr15:58979441-58979442	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs564522715	chr15:58979460-58979461	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs543157764	chr15:58979462-58979463	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs570950998	chr15:58979492-58979493	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs563357330	chr15:58979499-58979500	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs532050173	chr15:58979517-58979518	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs147310847	chr15:58979562-58979563	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs565265857	chr15:58979609-58979610	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs527962725	chr15:58979635-58979636	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs139231794	chr15:58979661-58979662	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs567539069	chr15:58979719-58979720	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs576457493	chr15:58979726-58979727	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs530265632	chr15:58979740-58979741	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs550013917	chr15:58979774-58979775	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs577586163	chr15:58979780-58979781	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs58319754	chr15:58979781-58979782	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs75753279	chr15:58979792-58979793	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs540723758	chr15:58979812-58979813	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs539903752	chr15:58979829-58979830	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs369383986	chr15:58979830-58979831	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs553197083	chr15:58979840-58979841	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs570134290	chr15:58979844-58979845	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs201556176	chr15:58979855-58979856	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs538687002	chr15:58979858-58979859	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs552592000	chr15:58979859-58979860	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs34341594	chr15:58979860-58979861	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs398043360	chr15:58979869-58979870	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs192902345	chr15:58979900-58979901	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs534938418	chr15:58979906-58979907	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs143167148	chr15:58979931-58979932	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs574695469	chr15:58979952-58979953	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs8032756	chr15:58979955-58979956	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs556824875	chr15:58979977-58979978	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs184485973	chr15:58979996-58979997	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs545514634	chr15:58980006-58980007	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Adenocarcinoma	19607727	CNVD
Squamous cell cancer	19607727	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:369 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58905000-58983200	Weak transcription	Esophagus	oesophagus
2	chr15:58923400-58982800	Weak transcription	Lung	lung
3	chr15:58933000-58987000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:58936200-58991400	Weak transcription	HMEC	breast
5	chr15:58951200-58987000	Weak transcription	NHEK	skin
6	chr15:58951600-58981800	Weak transcription	Fetal Brain Male	brain
7	chr15:58955200-58988400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:58956600-58984400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:58956600-58984600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:58956600-58987400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:58956800-58980000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr15:58956800-58982000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:58957400-58984400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:58957600-58989200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:58958800-58989000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:58960400-58982800	Weak transcription	Aorta	Aorta
17	chr15:58960400-58989600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:58961600-58987200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr15:58961800-58984600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:58962000-58986800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:58962000-58987200	Weak transcription	Fetal Lung	lung
22	chr15:58968200-58984000	Weak transcription	Brain Germinal Matrix	brain
23	chr15:58968400-58987000	Weak transcription	Fetal Kidney	kidney
24	chr15:58969200-58984200	Weak transcription	Fetal Intestine Large	intestine
25	chr15:58970600-58987200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:58971200-58982400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr15:58971400-58982000	Weak transcription	Primary T cells from cord blood	blood
28	chr15:58971400-58982800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr15:58971400-58982800	Weak transcription	Dnd41	blood
30	chr15:58971800-58982800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr15:58971800-58984800	Weak transcription	NHDF-Ad	bronchial
32	chr15:58971800-58986800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr15:58972000-58986600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:58972400-58982800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:58972400-58984200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:58972600-58983000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:58972600-58983000	Weak transcription	Spleen	Spleen
38	chr15:58972600-58984400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:58972600-58984400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:58972600-58988400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr15:58972600-58988800	Weak transcription	Fetal Stomach	stomach
42	chr15:58972600-58989000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr15:58973200-58984600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr15:58973200-58984800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:58973600-58982400	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:58973600-58984200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:58974600-58982400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:58974600-58991000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr15:58975200-58982200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr15:58975800-58982000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links