Variant report

Variant	nsv974651
Chromosome Location	chr15:49771424-49777183
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	FGF7	hsa-miR-155-5p	chr15:49776875-49776881

Extended variants
information (count: 199 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:199 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147529915	chr15:49771440-49771441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs59700895	chr15:49771451-49771452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs534230831	chr15:49771474-49771475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs548917753	chr15:49771483-49771484	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs12591533	chr15:49771484-49771485	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs530561785	chr15:49771539-49771540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs538327613	chr15:49771542-49771543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs9302148	chr15:49771557-49771558	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs9302149	chr15:49771560-49771561	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs144205305	chr15:49771620-49771621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs12324497	chr15:49771638-49771639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs28408092	chr15:49771648-49771649	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs12324501	chr15:49771668-49771669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs536151932	chr15:49771723-49771724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs557627964	chr15:49771729-49771730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs575804459	chr15:49771730-49771731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs546033689	chr15:49771752-49771753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs66999325	chr15:49771796-49771797	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs552340379	chr15:49771820-49771821	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs56097665	chr15:49771825-49771826	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs7164363	chr15:49771827-49771828	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs369991536	chr15:49771843-49771844	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs558251582	chr15:49771874-49771875	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs573219407	chr15:49771879-49771880	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs540654520	chr15:49771897-49771898	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs552432037	chr15:49771935-49771936	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs529985702	chr15:49771955-49771956	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs62009977	chr15:49771977-49771978	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
29	rs113317782	chr15:49772002-49772003	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs111755524	chr15:49772004-49772005	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs563204702	chr15:49772007-49772008	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs530738062	chr15:49772009-49772010	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs552058899	chr15:49772030-49772031	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs570543566	chr15:49772033-49772034	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs12441004	chr15:49772037-49772038	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs71467687	chr15:49772090-49772091	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs181489482	chr15:49772096-49772097	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs373065506	chr15:49772107-49772108	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs148871918	chr15:49772108-49772109	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs557689630	chr15:49772119-49772120	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs186790285	chr15:49772168-49772169	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs146974501	chr15:49772237-49772238	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs558050663	chr15:49772261-49772262	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs71467688	chr15:49772263-49772264	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs573313749	chr15:49772268-49772269	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs192283700	chr15:49772327-49772328	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs145438374	chr15:49772386-49772387	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs375968332	chr15:49772395-49772396	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs555384804	chr15:49772436-49772437	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs560866968	chr15:49772461-49772462	Strong transcription Weak transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Myelofibrosis	22110671	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	21364760	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49764600-49788400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr15:49764800-49775200	Weak transcription	Osteobl	bone
3	chr15:49765800-49775800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:49765800-49783200	Weak transcription	NHDF-Ad	bronchial
5	chr15:49767600-49775200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:49768200-49771800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:49770000-49772000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:49771800-49773000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:49772000-49772200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:49772200-49773800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:49773000-49775200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:49773800-49774200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:49774200-49775200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:49775200-49775600	Strong transcription	Osteobl	bone
15	chr15:49775200-49776400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:49775200-49777000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:49775200-49781800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:49775600-49781000	Weak transcription	Osteobl	bone
19	chr15:49775800-49776000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:49776000-49776200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:49776200-49776400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:49776400-49777200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr15:49776400-49781600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:49777000-49777400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links