Variant report

Variant	nsv974717
Chromosome Location	chr15:93170490-93180185
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93179227..93181968-chr15:93219677..93222839,3	MCF-7	breast:
2	chr15:93147223..93149686-chr15:93178777..93181726,2	MCF-7	breast:
3	chr15:93175127..93175659-chr15:93188590..93189361,2	MCF-7	breast:
4	chr15:93177241..93179900-chr20:34540760..34543268,2	MCF-7	breast:
5	chr15:93171890..93174329-chr15:93176505..93178295,2	K562	blood:
6	chr15:93179390..93182218-chr15:93285466..93288131,2	MCF-7	breast:
7	chr15:93174620..93175415-chr15:93226486..93227364,2	MCF-7	breast:
8	chr15:93171890..93174329-chr15:93176505..93178295,2	K562	blood:
9	chr15:93062742..93066323-chr15:93179954..93182328,3	MCF-7	breast:
10	chr15:93179900..93181087-chr15:93188477..93189400,6	MCF-7	breast:
11	chr15:93143236..93145258-chr15:93175927..93177616,2	MCF-7	breast:
12	chr15:93180068..93182597-chr15:93441905..93444737,2	MCF-7	breast:
13	chr15:93179667..93180988-chr15:93188433..93189415,4	MCF-7	breast:
14	chr15:93174783..93175659-chr15:93188526..93189361,3	MCF-7	breast:
15	chr15:93165242..93167435-chr15:93175583..93177925,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C15orf32-4	chr15:93170303-93170644	NONHSAT049648
2	lnc-C15orf32-3	chr15:93171152-93171193	NONHSAT049647

No data

Variant related genes	Relation type
ENSG00000185442	chromatin interactions
ENSG00000171222	chromatin interactions
ENSG00000173575	chromatin interactions

Extended variants
information (count: 530 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:530 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs547298335	chr15:93170534-93170535	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
2	rs116329518	chr15:93170536-93170537	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
3	rs570071563	chr15:93170578-93170579	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
4	rs144026023	chr15:93170585-93170586	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	Overlapped CNVs	n/a
5	rs77031838	chr15:93170619-93170620	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
6	rs148231974	chr15:93170656-93170657	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs535671393	chr15:93170683-93170684	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs115223753	chr15:93170685-93170686	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs373236452	chr15:93170719-93170720	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs572520080	chr15:93170771-93170772	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs28620510	chr15:93170804-93170805	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs558186777	chr15:93170810-93170811	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs147367498	chr15:93170812-93170813	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs557780773	chr15:93170839-93170840	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs543829068	chr15:93170854-93170855	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs114952285	chr15:93170860-93170861	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs574227711	chr15:93170869-93170870	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs74029160	chr15:93170894-93170895	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs139471328	chr15:93170927-93170928	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs527387756	chr15:93170943-93170944	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs540676235	chr15:93170961-93170962	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs563186361	chr15:93170983-93170984	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs181322498	chr15:93170987-93170988	Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs373866199	chr15:93171008-93171009	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs147543451	chr15:93171022-93171023	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs56405914	chr15:93171023-93171024	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs529143089	chr15:93171030-93171031	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs57362979	chr15:93171039-93171040	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs565692180	chr15:93171040-93171041	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs534808635	chr15:93171060-93171061	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs558323910	chr15:93171120-93171121	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs58674842	chr15:93171144-93171145	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs569991771	chr15:93171158-93171159	Strong transcription Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
34	rs4778018	chr15:93171160-93171161	Strong transcription Weak transcription ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs574290340	chr15:93171184-93171185	Strong transcription Weak transcription ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
36	rs542908572	chr15:93171239-93171240	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs184018658	chr15:93171271-93171272	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs78566238	chr15:93171282-93171283	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs371210781	chr15:93171299-93171300	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs545185254	chr15:93171308-93171309	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs375108726	chr15:93171329-93171330	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs190055850	chr15:93171364-93171365	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs35058892	chr15:93171388-93171389	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs532838553	chr15:93171402-93171403	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs397853887	chr15:93171412-93171413	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs28682910	chr15:93171429-93171430	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs543031910	chr15:93171452-93171453	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs563098449	chr15:93171493-93171494	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs529192226	chr15:93171517-93171518	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs375852435	chr15:93171567-93171568	Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD

Chromatin state (count:292 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93151600-93178000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:93160200-93172800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:93161200-93173000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:93161400-93178000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:93161800-93172600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:93162400-93172000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:93163600-93180600	Weak transcription	Small Intestine	intestine
8	chr15:93164000-93172200	Weak transcription	Ovary	ovary
9	chr15:93167000-93177400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:93167600-93176400	Weak transcription	Fetal Heart	heart
11	chr15:93167800-93178200	Weak transcription	Colonic Mucosa	Colon
12	chr15:93167800-93179800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr15:93168200-93172200	Weak transcription	Left Ventricle	heart
14	chr15:93168200-93173000	Weak transcription	Esophagus	oesophagus
15	chr15:93168200-93175200	Weak transcription	Aorta	Aorta
16	chr15:93168200-93178000	Weak transcription	Fetal Brain Male	brain
17	chr15:93168200-93178000	Weak transcription	Lung	lung
18	chr15:93168200-93179800	Weak transcription	Spleen	Spleen
19	chr15:93168200-93180200	Weak transcription	Psoas Muscle	Psoas
20	chr15:93168400-93179200	Weak transcription	Adipose Nuclei	Adipose
21	chr15:93168600-93172600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr15:93168600-93172800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:93168600-93173000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:93168800-93170600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr15:93168800-93172200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:93168800-93173200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr15:93168800-93173400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr15:93168800-93174600	Weak transcription	Fetal Brain Female	brain
29	chr15:93168800-93175000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr15:93168800-93177400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:93168800-93177600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:93169000-93172200	Weak transcription	Stomach Mucosa	stomach
33	chr15:93169000-93173000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:93169000-93180400	Weak transcription	Fetal Kidney	kidney
35	chr15:93169200-93172200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr15:93169200-93172200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:93169200-93172400	Weak transcription	Brain Angular Gyrus	brain
38	chr15:93169200-93172400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:93169200-93172400	Weak transcription	Brain Hippocampus Middle	brain
40	chr15:93169200-93172600	Weak transcription	Brain Substantia Nigra	brain
41	chr15:93169200-93173000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:93169200-93176000	Weak transcription	Right Atrium	heart
43	chr15:93169200-93176000	Weak transcription	Right Ventricle	heart
44	chr15:93169200-93177800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr15:93169200-93178000	Weak transcription	Brain Anterior Caudate	brain
46	chr15:93169200-93178400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:93169200-93179200	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:93169200-93180200	Weak transcription	A549	lung
49	chr15:93169400-93173200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:93169600-93172200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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