Variant report

Variant	nsv974735
Chromosome Location	chr16:31933472-31947343
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:31932903..31935520-chr16:31946813..31948460,2	K562	blood:
2	chr16:31926461..31927983-chr16:31935855..31938647,2	K562	blood:
3	chr16:31931465..31935999-chr16:31936605..31940603,7	K562	blood:
4	chr16:31932491..31936311-chr16:31936605..31941493,6	K562	blood:
5	chr16:31929972..31932646-chr16:31933691..31936236,4	MCF-7	breast:
6	chr16:31931465..31935999-chr16:31936605..31940603,7	K562	blood:
7	chr16:31929792..31932707-chr16:31934299..31936447,2	K562	blood:
8	chr16:31930170..31932707-chr16:31934024..31936447,2	K562	blood:
9	chr16:31932903..31935520-chr16:31946813..31948460,2	K562	blood:
10	chr16:31932491..31936311-chr16:31936605..31941493,6	K562	blood:

No data

Extended variants
information (count: 268 )
Associated
traits (count: 120 )

Variant overlapped rSNPs/rCNVs (count:268 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs561927123	chr16:31933624-31933625	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs529140232	chr16:31933646-31933647	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs547496232	chr16:31933668-31933669	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs565817876	chr16:31933707-31933708	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs532924383	chr16:31933716-31933717	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs551380473	chr16:31933718-31933719	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs564803298	chr16:31933746-31933747	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs55668146	chr16:31933763-31933764	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs537759846	chr16:31933815-31933816	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs117155705	chr16:31933826-31933827	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs531075389	chr16:31933845-31933846	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs567844822	chr16:31933907-31933908	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs138160596	chr16:31933935-31933936	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs79449048	chr16:31933939-31933940	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs577729653	chr16:31934029-31934030	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs544973557	chr16:31934149-31934150	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs570708947	chr16:31934157-31934158	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs181388026	chr16:31934164-31934165	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs576214479	chr16:31934248-31934249	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs528593932	chr16:31934252-31934253	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs543689781	chr16:31934272-31934273	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs561878132	chr16:31934334-31934335	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs573867753	chr16:31934352-31934353	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs541245635	chr16:31934547-31934548	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs116292720	chr16:31934622-31934623	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs533064999	chr16:31934668-31934669	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs59378014	chr16:31934693-31934694	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs563287791	chr16:31934764-31934765	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs186198493	chr16:31934802-31934803	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs190060799	chr16:31934804-31934805	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs567651694	chr16:31934846-31934847	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs534854355	chr16:31934883-31934884	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs546810786	chr16:31934887-31934888	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs183041613	chr16:31934889-31934890	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs539130357	chr16:31934929-31934930	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs144615103	chr16:31934941-31934942	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs116720995	chr16:31934943-31934944	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs185769383	chr16:31934971-31934972	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs77153548	chr16:31934980-31934981	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs574008218	chr16:31935005-31935006	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs191014135	chr16:31935020-31935021	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs112131313	chr16:31935077-31935078	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs66500707	chr16:31935078-31935079	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs72535049	chr16:31935079-31935080	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs144449668	chr16:31935081-31935082	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs145715742	chr16:31935083-31935084	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs138582619	chr16:31935085-31935086	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs137929791	chr16:31935086-31935087	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs368852385	chr16:31935098-31935099	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs183702954	chr16:31935124-31935125	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:120)

Disease	PMID	Source
Hodgkin''s lymphoma	20651079	CNVD
Metanephric adenoma	20802469	CNVD
Melanoma	18172304	CNVD
Breast cancer	16608533	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Autism	22566537	CNVD
Intellectual disability	22566537	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21509527	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Mental retardation	19951919	CNVD
Colorectal cancer	16272173	CNVD
Bladder cancer	21909424	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21990379	CNVD
Astrocytoma	22246337	CNVD
Myelofibrosis	22110671	CNVD
Epilepsy	22499536	CNVD
Attention deficit hyperactivity disorder	21324949	CNVD
Austim spectrum disorder	21302340	CNVD
Autism	22513405	CNVD
Autism	22958593	CNVD
Autism	18184952	CNVD
Autism	19966786	CNVD
Autism	21394203	CNVD
Autism	21969575	CNVD
Autism	22241247	CNVD
Autism	20970697	CNVD
Autism	20942916	CNVD
Epilepsy	20970697	CNVD
Intellectual disability	22045946	CNVD
Mental retardation	19966786	CNVD
Developmental delay	20808231	CNVD
Obesity	20808231	CNVD
Autism	18923514	CNVD
Obesity	21881559	CNVD
Obesity	21956041	CNVD
Autism	20659124	CNVD
Mental retardation	21062444	CNVD
Schizophrenia	20587603	CNVD
Schizophrenia	21285140	CNVD
Schizophrenia	22885689	CNVD
Schizophrenia	20553308	CNVD
Schizophrenia	20970697	CNVD
Schizophrenia	20433910	CNVD
Schizophrenia	22241247	CNVD
Autism	19242545	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Intracranial ependymoma	16609018	CNVD
Schizophrenia	21399695	CNVD
Autism	21956041	CNVD
Disorders of sex development	21048976	CNVD
Autism	22067053	CNVD
Autism	18156158	CNVD
Mental retardation	20152051	CNVD
Autism	19218893	CNVD
Autism	21289514	CNVD
Schizophrenia	19855392	CNVD
neurodevelopmental Syndrome	20503337	CNVD
Benign familial neonatal-infantile seizures	21060786	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Cancer	21183584	CNVD
Low-grade fibromyxoid sarcoma	21536545	CNVD
Breast cancer	21045282	CNVD
Neuroblastoma	20406844	CNVD
Autism	19050728	CNVD
Epilepsy	20923578	CNVD
Psychiatric disorder	19050728	CNVD
Schizophrenia	19348701	CNVD
Attention deficit hyperactivity disorder	19097825	CNVD
Autism	20964600	CNVD
Schizophrenia	19955444	CNVD
Schizophrenia	18990708	CNVD
Schizophrenia	19571808	CNVD
Breast cancer	20409316	CNVD
Severe combined immunodeficiency	19097825	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Autism	18522746	CNVD
Sezary syndrome	18413736	CNVD
Wilms tumour	21544195	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Autism	19287141	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	20967226	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31917000-31934000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr16:31917000-31935200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr16:31917000-31935400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:31931200-31936600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr16:31933200-31933600	ZNF genes & repeats	Liver	Liver
6	chr16:31937000-31941600	ZNF genes & repeats	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links