Variant report

Variant	nsv975007
Chromosome Location	chr10:37677218-37743945
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:37535703..37536248-chr10:37723129..37723712,2	MCF-7	breast:
2	chr10:36262650..36263629-chr10:37706794..37707324,2	MCF-7	breast:
3	chr10:37723142..37723685-chr10:37996088..37997097,3	MCF-7	breast:
4	chr10:37723535..37727609-chr10:37776339..37780982,4	MCF-7	breast:
5	chr10:37722752..37723403-chr10:38043447..38044187,4	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD30A-5	chr10:37687110-37687233	NONHSAT012778
2	lnc-ANKRD30A-5	chr10:37718973-37719450	NONHSAT012776
3	lnc-ANKRD30A-5	chr10:37718973-37719450	NONHSAT012778
4	lnc-ANKRD30A-5	chr10:37684461-37685164	NONHSAT012776
5	lnc-ANKRD30A-5	chr10:37718973-37719648	XLOC_008455
6	lnc-ANKRD30A-5	chr10:37687139-37687233	NONHSAT012776
7	lnc-ANKRD30A-5	chr10:37684566-37684681	XLOC_008455
8	lnc-ANKRD30A-5	chr10:37707165-37730322	NONHSAT012779

No data

Extended variants
information (count: 1342 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:1342 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs115206421	chr10:37679848-37679849	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs183445591	chr10:37679876-37679877	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs533137327	chr10:37679903-37679904	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs536457069	chr10:37679920-37679921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs546935878	chr10:37679931-37679932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs376515520	chr10:37679935-37679936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs188654005	chr10:37679968-37679969	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs190408222	chr10:37679977-37679978	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs528489743	chr10:37680002-37680003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs182621519	chr10:37680017-37680018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs369330746	chr10:37680057-37680058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs372650167	chr10:37680080-37680081	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs568362083	chr10:37680137-37680138	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs554732069	chr10:37680226-37680227	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs537190342	chr10:37680238-37680239	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs150880882	chr10:37680269-37680270	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs111537993	chr10:37680290-37680291	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs145796680	chr10:37680292-37680293	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs539617269	chr10:37680306-37680307	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs79313210	chr10:37680314-37680315	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs140614569	chr10:37680337-37680338	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs535770148	chr10:37680361-37680362	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs186910463	chr10:37680362-37680363	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs545322411	chr10:37680385-37680386	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs374384653	chr10:37680468-37680469	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs376908499	chr10:37680492-37680493	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs367763734	chr10:37680496-37680497	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs373434161	chr10:37680513-37680514	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs544349959	chr10:37680551-37680552	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs191519886	chr10:37680596-37680597	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs182687238	chr10:37680597-37680598	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs566644783	chr10:37680616-37680617	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs59775887	chr10:37680683-37680684	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs560193778	chr10:37680694-37680695	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs188823595	chr10:37680701-37680702	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs145665860	chr10:37680717-37680718	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs548998681	chr10:37680726-37680727	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs561782177	chr10:37680775-37680776	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs193204631	chr10:37680810-37680811	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs138261146	chr10:37680824-37680825	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs570578251	chr10:37680837-37680838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs539648928	chr10:37680883-37680884	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs185342417	chr10:37680941-37680942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs547218897	chr10:37680947-37680948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs566941335	chr10:37681011-37681012	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs371093488	chr10:37681015-37681016	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs57273290	chr10:37681026-37681027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs10764131	chr10:37681073-37681074	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs555760222	chr10:37681077-37681078	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs374978557	chr10:37681097-37681098	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Bethlem myopathy	20302629	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hepatocellular carcinoma	16785998	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Bipolar disorder	19114987	CNVD
Lung cancer	21569311	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37679800-37681400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr10:37680200-37681800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr10:37690000-37690600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:37693400-37695800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr10:37701200-37701600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:37707600-37708600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:37710800-37711200	Active TSS	Fetal Heart	heart
8	chr10:37716600-37716800	ZNF genes & repeats	Right Atrium	heart
9	chr10:37716800-37717200	Weak transcription	Right Atrium	heart
10	chr10:37717600-37718200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:37717600-37719000	Weak transcription	Fetal Heart	heart
12	chr10:37719000-37719400	ZNF genes & repeats	Fetal Heart	heart
13	chr10:37719400-37720800	Weak transcription	Fetal Heart	heart
14	chr10:37722000-37722600	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr10:37722800-37723200	Enhancers	A549	lung
16	chr10:37728400-37728800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr10:37728600-37729200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:37729000-37729400	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr10:37735600-37737600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:37736600-37737800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:37737600-37742400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:37742400-37744400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:37742600-37749200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell

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