Variant report

Variant	nsv975035
Chromosome Location	chr10:37730013-37786245
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:37779289..37781290-chr10:37781587..37784398,2	MCF-7	breast:
2	chr10:37779289..37781290-chr10:37781587..37784398,2	MCF-7	breast:
3	chr10:37723535..37727609-chr10:37776339..37780982,4	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD30A-12	chr10:37762651-37762906	NONHSAT012780
2	lnc-ANKRD30A-5	chr10:37707165-37730322	NONHSAT012779
3	lnc-ANKRD30A-12	chr10:37760992-37761824	NONHSAT012780

No data

Extended variants
information (count: 1529 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:1529 , 50 per page) page: 1 2 3 4 5 6 7 ... 31

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184250736	chr10:37730086-37730087	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs556074132	chr10:37730107-37730108	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs568281709	chr10:37730116-37730117	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs190583837	chr10:37730134-37730135	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs558992525	chr10:37730202-37730203	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs549764835	chr10:37730215-37730216	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs374825104	chr10:37730277-37730278	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs567423185	chr10:37735640-37735641	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs558938423	chr10:37735670-37735671	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs183189099	chr10:37735685-37735686	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs572331308	chr10:37735707-37735708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs144554292	chr10:37735727-37735728	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs147845004	chr10:37735734-37735735	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs572668342	chr10:37735772-37735773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs541051276	chr10:37735783-37735784	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs541294815	chr10:37735801-37735802	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs560822163	chr10:37735840-37735841	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs574595867	chr10:37735875-37735876	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs187069763	chr10:37735953-37735954	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs543584817	chr10:37735959-37735960	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs561641472	chr10:37735960-37735961	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs532234755	chr10:37736027-37736028	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs112504596	chr10:37736040-37736041	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs113567180	chr10:37736066-37736067	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs191493665	chr10:37736132-37736133	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs182129660	chr10:37736139-37736140	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs112244629	chr10:37736147-37736148	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs142626087	chr10:37736165-37736166	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs150974074	chr10:37736170-37736171	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs371225745	chr10:37736175-37736176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs538877670	chr10:37736262-37736263	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs140777509	chr10:37736312-37736313	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs572655517	chr10:37736317-37736318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs535297144	chr10:37736321-37736322	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs61857715	chr10:37736327-37736328	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs150112853	chr10:37736380-37736381	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs543420546	chr10:37736383-37736384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs2475201	chr10:37736433-37736434	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs576843703	chr10:37736459-37736460	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs187908589	chr10:37736463-37736464	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs559457160	chr10:37736482-37736483	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs34820406	chr10:37736554-37736555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs398075090	chr10:37736564-37736565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs397846145	chr10:37736565-37736566	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs528262461	chr10:37736654-37736655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs563182505	chr10:37736748-37736749	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs193250931	chr10:37736816-37736817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs77537798	chr10:37736823-37736824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs140225415	chr10:37736830-37736831	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs185301744	chr10:37736831-37736832	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Bethlem myopathy	20302629	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hepatocellular carcinoma	16785998	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Lung cancer	21569311	CNVD
Cancer	20164919	CNVD

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37735600-37737600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:37736600-37737800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:37737600-37742400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:37742400-37744400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:37742600-37749200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr10:37755400-37758000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:37765000-37765800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr10:37765200-37766000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr10:37766000-37767400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:37766800-37768600	Enhancers	HSMM	muscle
11	chr10:37767400-37767800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:37767400-37767800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:37767400-37767800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:37767800-37772200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:37772200-37773200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:37773200-37777600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:37777000-37777600	Enhancers	A549	lung
18	chr10:37777200-37778400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:37777400-37777600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:37777400-37777600	Enhancers	HSMMtube	muscle
21	chr10:37777400-37777800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr10:37777600-37778000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:37777600-37778000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:37777600-37778000	Flanking Active TSS	A549	lung
25	chr10:37777600-37778000	Flanking Active TSS	HSMMtube	muscle
26	chr10:37777600-37778600	Enhancers	HSMM	muscle
27	chr10:37777600-37779000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr10:37777600-37779000	Enhancers	Adipose Nuclei	Adipose
29	chr10:37777600-37779200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:37777600-37779400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:37777800-37778000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:37777800-37778000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:37777800-37778400	Enhancers	Hela-S3	cervix
34	chr10:37777800-37778400	Active TSS	Osteobl	bone
35	chr10:37777800-37779000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr10:37778000-37778400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:37778000-37778600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:37778000-37778600	Active TSS	A549	lung
39	chr10:37778000-37778600	Active TSS	HSMMtube	muscle
40	chr10:37778000-37779000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:37778400-37778600	Flanking Active TSS	Osteobl	bone
42	chr10:37778400-37779000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr10:37778400-37779200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:37778400-37779600	Flanking Active TSS	Hela-S3	cervix
45	chr10:37778600-37778800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr10:37778600-37778800	Flanking Active TSS	HSMMtube	muscle
47	chr10:37778600-37779000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:37778600-37779200	Flanking Active TSS	HSMM	muscle
49	chr10:37778600-37779400	Flanking Active TSS	A549	lung
50	chr10:37778600-37779400	Enhancers	Osteobl	bone

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