Variant report

Variant	nsv975040
Chromosome Location	chr10:57117943-57129042
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:57128438..57131267-chr10:57136615..57139314,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZWINT-4	chr10:57125852-57125973	ENSG00000236744.2
2	lnc-ZWINT-4	chr10:57125852-57125973	ENSG00000236744.1

Extended variants
information (count: 245 )
Associated
traits (count: 62 )

Variant overlapped rSNPs/rCNVs (count:245 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs73255731	chr10:57118001-57118002	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs533467781	chr10:57118062-57118063	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs141288509	chr10:57118164-57118165	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs570313401	chr10:57118167-57118168	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs115354231	chr10:57118175-57118176	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs188518554	chr10:57118177-57118178	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs10825501	chr10:57118223-57118224	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs534555454	chr10:57118229-57118230	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs558214932	chr10:57118243-57118244	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs534681309	chr10:57118253-57118254	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs181579526	chr10:57118255-57118256	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs185675201	chr10:57118281-57118282	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs1900491	chr10:57118292-57118293	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs190969018	chr10:57118319-57118320	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs573874702	chr10:57118331-57118332	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs542259985	chr10:57118408-57118409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs559260528	chr10:57118428-57118429	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs145451383	chr10:57118430-57118431	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs372578797	chr10:57118441-57118442	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs544675718	chr10:57118451-57118452	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs545216650	chr10:57118476-57118477	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs564616789	chr10:57118478-57118479	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs543412751	chr10:57118507-57118508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs375466348	chr10:57118508-57118509	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs533383926	chr10:57118541-57118542	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs182240584	chr10:57118576-57118577	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs563873355	chr10:57118675-57118676	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs2218583	chr10:57118704-57118705	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs187123108	chr10:57118742-57118743	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs76108650	chr10:57118829-57118830	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs574337839	chr10:57118834-57118835	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs137975997	chr10:57118908-57118909	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs548657193	chr10:57118912-57118913	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs553744170	chr10:57118942-57118943	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs191139266	chr10:57118962-57118963	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs73255735	chr10:57118965-57118966	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs200779524	chr10:57118980-57118981	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs142675410	chr10:57119012-57119013	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs34290785	chr10:57119046-57119047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs182557901	chr10:57119071-57119072	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs187317127	chr10:57119084-57119085	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs10763195	chr10:57119145-57119146	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs536511925	chr10:57119147-57119148	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs568545003	chr10:57119153-57119154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs190078680	chr10:57119169-57119170	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs10763196	chr10:57119198-57119199	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs370651653	chr10:57119238-57119239	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs532904267	chr10:57119275-57119276	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs565028602	chr10:57119318-57119319	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs532611775	chr10:57119410-57119411	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:62)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57117800-57119800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:57125000-57125600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:57125600-57129800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:57128400-57132600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:57128800-57130800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links