Variant report

Variant	nsv975061
Chromosome Location	chr10:26066207-26072547
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:26065090..26066663-chr10:26068354..26071045,2	K562	blood:
2	chr10:26070108..26071953-chr10:26073853..26075494,2	K562	blood:
3	chr10:26065090..26066663-chr10:26068354..26071045,2	K562	blood:

Extended variants
information (count: 260 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:260 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551274314	chr10:26066243-26066244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs368770408	chr10:26066306-26066307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs537542079	chr10:26066309-26066310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs567837094	chr10:26066321-26066322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs34073082	chr10:26066386-26066387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs11014741	chr10:26066413-26066414	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs527663800	chr10:26066415-26066416	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs188754221	chr10:26066430-26066431	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs192544830	chr10:26066451-26066452	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs538715416	chr10:26066511-26066512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs12261856	chr10:26066590-26066591	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs184218439	chr10:26066609-26066610	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs2442836	chr10:26066618-26066619	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs554852914	chr10:26066621-26066622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs186768590	chr10:26066624-26066625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs16926346	chr10:26066660-26066661	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs528594098	chr10:26066666-26066667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs370262845	chr10:26066679-26066680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs11014742	chr10:26066686-26066687	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs565202591	chr10:26066715-26066716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs559111420	chr10:26066737-26066738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs367928393	chr10:26066748-26066749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs527953541	chr10:26066763-26066764	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs114419056	chr10:26066767-26066768	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs567989001	chr10:26066787-26066788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs375824531	chr10:26066831-26066832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs530410502	chr10:26066889-26066890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs191607149	chr10:26066908-26066909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs375315448	chr10:26066940-26066941	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs184830733	chr10:26066958-26066959	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs558178429	chr10:26067012-26067013	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs374455520	chr10:26067061-26067062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs189605647	chr10:26067067-26067068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs143524438	chr10:26067069-26067070	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs375138800	chr10:26067070-26067071	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs200995254	chr10:26067071-26067072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs34869751	chr10:26067115-26067116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs537858151	chr10:26067159-26067160	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs554259390	chr10:26067176-26067177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs142602823	chr10:26067217-26067218	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs77297505	chr10:26067269-26067270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs553587334	chr10:26067320-26067321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs13377122	chr10:26067370-26067371	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs545567907	chr10:26067378-26067379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs541858744	chr10:26067502-26067503	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs565385011	chr10:26067503-26067504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs190248805	chr10:26067534-26067535	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs530897014	chr10:26067604-26067605	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs562180399	chr10:26067608-26067609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs544639909	chr10:26067645-26067646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21525872	CNVD
Adrenocortical carcinoma	18281524	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26065200-26067800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:26066200-26071600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:26066200-26076400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr10:26066200-26082800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr10:26069000-26069800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:26069000-26077600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:26069800-26082800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:26071200-26073200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr10:26071400-26072800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr10:26071600-26072200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:26071600-26072400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:26071800-26072200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:26072200-26077000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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