Variant report

Variant	nsv975072
Chromosome Location	chr10:37990724-38017623
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:37822760..37823349-chr10:37996545..37997377,2	MCF-7	breast:
2	chr10:37723142..37723685-chr10:37996088..37997097,3	MCF-7	breast:
3	chr10:37976754..37978580-chr10:37994431..37996961,2	K562	blood:
4	chr10:37813995..37814614-chr10:37996634..37997459,3	MCF-7	breast:

Extended variants
information (count: 676 )
Associated
traits (count: 45 )

Variant overlapped rSNPs/rCNVs (count:676 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs375481657	chr10:37990753-37990754	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs544648241	chr10:37990758-37990759	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs564546763	chr10:37990764-37990765	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs533534279	chr10:37990779-37990780	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs71489162	chr10:37990803-37990804	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs540608089	chr10:37990825-37990826	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs560747907	chr10:37990833-37990834	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs34185758	chr10:37990854-37990855	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs75757211	chr10:37990856-37990857	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs568821771	chr10:37990892-37990893	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs531453912	chr10:37990919-37990920	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs10764145	chr10:37990928-37990929	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs571383912	chr10:37990941-37990942	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs190362325	chr10:37990997-37990998	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs567076179	chr10:37991662-37991663	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs563784698	chr10:37991690-37991691	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs181042050	chr10:37991720-37991721	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs35110480	chr10:37991751-37991752	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs568945465	chr10:37991802-37991803	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs7916352	chr10:37991825-37991826	ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs536267508	chr10:37991846-37991847	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs578044217	chr10:37991848-37991849	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs549419942	chr10:37991856-37991857	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs368635056	chr10:37991860-37991861	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs533999334	chr10:37991861-37991862	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs150202095	chr10:37991935-37991936	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs185115262	chr10:37991948-37991949	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs543373525	chr10:37991986-37991987	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs1814077	chr10:37992018-37992019	ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs138728424	chr10:37992156-37992157	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs111396575	chr10:37992167-37992168	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs564683678	chr10:37992180-37992181	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs189680349	chr10:37992181-37992182	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs36032780	chr10:37992201-37992202	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs114631946	chr10:37992237-37992238	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs184161073	chr10:37992288-37992289	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs529824491	chr10:37992292-37992293	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs149342412	chr10:37992354-37992355	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs76141298	chr10:37992367-37992368	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs188712002	chr10:37992398-37992399	ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs76854284	chr10:37992406-37992407	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs571521602	chr10:37992454-37992455	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs111384808	chr10:37992486-37992487	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs144144591	chr10:37992544-37992545	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs78435481	chr10:37992573-37992574	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs567884105	chr10:37992581-37992582	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs536835259	chr10:37992582-37992583	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs556936869	chr10:37992585-37992586	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs576682754	chr10:37992595-37992596	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs545329839	chr10:37992599-37992600	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Bethlem myopathy	20302629	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hepatocellular carcinoma	16785998	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37990000-37991000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:37991600-37992400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:37991600-37992400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:37991600-37992400	Enhancers	HSMMtube	muscle
5	chr10:37991600-37994400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
6	chr10:37992000-37994000	Enhancers	HSMM	muscle
7	chr10:37992400-37992800	Weak transcription	HSMMtube	muscle
8	chr10:37992800-37994000	Enhancers	HSMMtube	muscle
9	chr10:37993000-37994000	Enhancers	Adipose Nuclei	Adipose
10	chr10:37994000-37996800	Weak transcription	HSMM	muscle
11	chr10:37994000-37996800	Weak transcription	HSMMtube	muscle
12	chr10:37996800-37997800	Enhancers	HSMM	muscle
13	chr10:37996800-37997800	Enhancers	HSMMtube	muscle
14	chr10:37997800-37999000	Weak transcription	HSMMtube	muscle
15	chr10:37997800-37999600	Weak transcription	HSMM	muscle
16	chr10:37999000-38002200	Enhancers	HSMMtube	muscle
17	chr10:37999400-38002200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:37999600-38000000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr10:37999600-38002000	Enhancers	HSMM	muscle
20	chr10:37999800-38000000	Enhancers	NHLF	lung
21	chr10:37999800-38000200	Enhancers	A549	lung
22	chr10:37999800-38000400	Enhancers	Lung	lung
23	chr10:37999800-38002200	Enhancers	Left Ventricle	heart
24	chr10:37999800-38002200	Enhancers	Right Atrium	heart
25	chr10:37999800-38002600	Enhancers	Right Ventricle	heart
26	chr10:38000000-38000600	Enhancers	Rectal Smooth Muscle	rectum
27	chr10:38000000-38002200	Weak transcription	NHLF	lung
28	chr10:38000000-38002400	Enhancers	Stomach Smooth Muscle	stomach
29	chr10:38000000-38002600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:38000200-38000400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr10:38000200-38001000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr10:38000200-38001000	Enhancers	Pancreas	Pancrea
33	chr10:38000400-38001200	Weak transcription	Lung	lung
34	chr10:38000400-38002600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:38000400-38002800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr10:38000600-38001800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr10:38001000-38001400	Enhancers	Colon Smooth Muscle	Colon
38	chr10:38001200-38001600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr10:38001200-38001600	ZNF genes & repeats	Spleen	Spleen
40	chr10:38001200-38002200	Enhancers	Lung	lung
41	chr10:38001200-38002800	Enhancers	Adipose Nuclei	Adipose
42	chr10:38001400-38001600	Flanking Active TSS	Colon Smooth Muscle	Colon
43	chr10:38001400-38002000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
44	chr10:38001400-38002800	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr10:38001600-38002200	Enhancers	Colon Smooth Muscle	Colon
46	chr10:38001800-38002600	Enhancers	Rectal Smooth Muscle	rectum
47	chr10:38002200-38002400	Enhancers	NHLF	lung
48	chr10:38009200-38009800	Enhancers	HepG2	liver
49	chr10:38011400-38011600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr10:38011800-38012400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links