Variant report

Variant	nsv975158
Chromosome Location	chr11:18908102-18909909
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:18909034-18909050	Gliobla	brain:	n/a	n/a
2	POLR2A	chr11:18909095-18909097	Gliobla	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000254541	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76213258	chr11:18908105-18908106	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs185140515	chr11:18908118-18908119	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs572354041	chr11:18908140-18908141	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs147006187	chr11:18908144-18908145	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs564057539	chr11:18908154-18908155	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs11463212	chr11:18908196-18908197	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs397689206	chr11:18908205-18908206	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs369565645	chr11:18908206-18908207	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs374604740	chr11:18908207-18908208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs377710907	chr11:18908208-18908209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs548102495	chr11:18908212-18908213	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs560125974	chr11:18908231-18908232	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs10734270	chr11:18908255-18908256	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs549546522	chr11:18908343-18908344	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs561771082	chr11:18908354-18908355	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs138130488	chr11:18908398-18908399	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs541280951	chr11:18908399-18908400	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs377261753	chr11:18908425-18908426	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs547176408	chr11:18908432-18908433	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs532050660	chr11:18908443-18908444	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs532972315	chr11:18908446-18908447	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs552874894	chr11:18908457-18908458	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs571137843	chr11:18908466-18908467	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs538573370	chr11:18908469-18908470	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs373692691	chr11:18908485-18908486	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs568609364	chr11:18908496-18908497	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs527399819	chr11:18908518-18908519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs552119335	chr11:18908556-18908557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs535898247	chr11:18908563-18908564	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs143599705	chr11:18908564-18908565	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs373010775	chr11:18908568-18908569	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Myelofibrosis	22110671	CNVD
Neuroblastoma	21899760	CNVD
Lung adenocarcinoma	17086460	CNVD
Urothelial cell carcinoma	18451213	CNVD
Lung cancer	17086460	CNVD
Uterine serous papillary cancer	19536090	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Ollier disease	21235737	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Ependymoma	20639864	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18908000-18908600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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