Variant report

Variant	nsv975764
Chromosome Location	chr10:19598826-19602942
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:19598040..19600371-chr10:19601058..19603498,2	MCF-7	breast:
2	chr10:19598040..19600371-chr10:19601058..19603498,2	MCF-7	breast:
3	chr10:19590664..19593584-chr10:19602792..19604860,2	K562	blood:

Extended variants
information (count: 182 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:182 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184248196	chr10:19598888-19598889	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs149359390	chr10:19598936-19598937	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs575863623	chr10:19598989-19598990	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs190738405	chr10:19598998-19598999	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs144732068	chr10:19599057-19599058	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs368300831	chr10:19599078-19599079	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs182090314	chr10:19599116-19599117	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs138398294	chr10:19599136-19599137	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs564989829	chr10:19599157-19599158	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs553960608	chr10:19599178-19599179	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs185449673	chr10:19599258-19599259	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs2499062	chr10:19599280-19599281	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs562656337	chr10:19599286-19599287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs2499061	chr10:19599287-19599288	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs2516324	chr10:19599290-19599291	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs566286750	chr10:19599297-19599298	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs565987703	chr10:19599357-19599358	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs546824403	chr10:19599364-19599365	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571701512	chr10:19599366-19599367	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs575969193	chr10:19599384-19599385	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs538674707	chr10:19599410-19599411	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs143950835	chr10:19599443-19599444	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs369235633	chr10:19599466-19599467	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs188970879	chr10:19599476-19599477	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs543048146	chr10:19599477-19599478	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs536906240	chr10:19599513-19599514	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs116522935	chr10:19599527-19599528	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs573525827	chr10:19599556-19599557	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs570777248	chr10:19599616-19599617	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs540806236	chr10:19599646-19599647	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs558401889	chr10:19599649-19599650	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs181371718	chr10:19599660-19599661	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs564563233	chr10:19599670-19599671	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs147303356	chr10:19599676-19599677	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs185563283	chr10:19599692-19599693	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs189979041	chr10:19599693-19599694	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs181031092	chr10:19599721-19599722	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs140996780	chr10:19599725-19599726	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs142446756	chr10:19599729-19599730	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs565259638	chr10:19599772-19599773	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs528478000	chr10:19599788-19599789	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs376179791	chr10:19599823-19599824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs185870211	chr10:19599835-19599836	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs150914620	chr10:19599910-19599911	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs139458735	chr10:19599915-19599916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs536645655	chr10:19599942-19599943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs548929223	chr10:19599953-19599954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs77647340	chr10:19599971-19599972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs192511955	chr10:19600042-19600043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs74919202	chr10:19600043-19600044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19573000-19606000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:19587800-19637800	Weak transcription	Fetal Intestine Small	intestine
3	chr10:19589000-19608400	Weak transcription	Fetal Intestine Large	intestine
4	chr10:19596200-19603600	Weak transcription	HepG2	liver
5	chr10:19598600-19599600	Enhancers	NH-A	brain
6	chr10:19598800-19599800	Enhancers	Osteobl	bone
7	chr10:19599000-19599400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:19599200-19599600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr10:19600800-19601200	Enhancers	Fetal Heart	heart

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