Variant report

Variant	nsv975765
Chromosome Location	chr10:19754817-19765632
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 516 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:516 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553293095	chr10:19754865-19754866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs7089570	chr10:19754883-19754884	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
3	rs139380704	chr10:19754892-19754893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs11814824	chr10:19754950-19754951	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs575752851	chr10:19754970-19754971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs191468206	chr10:19755025-19755026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs554642593	chr10:19755050-19755051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs572788077	chr10:19755060-19755061	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs183631973	chr10:19755093-19755094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs112864530	chr10:19755125-19755126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs532472227	chr10:19755132-19755133	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs370804878	chr10:19755149-19755150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs576891631	chr10:19755206-19755207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs562685319	chr10:19755209-19755210	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs529853748	chr10:19755214-19755215	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs149640344	chr10:19755218-19755219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs567739938	chr10:19755226-19755227	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs528511508	chr10:19755234-19755235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs545579508	chr10:19755238-19755239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs571271411	chr10:19755246-19755247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs7088993	chr10:19755266-19755267	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs7073581	chr10:19755304-19755305	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs569840636	chr10:19755309-19755310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs569397395	chr10:19755357-19755358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs536841141	chr10:19755397-19755398	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs554400042	chr10:19755460-19755461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs572871683	chr10:19755466-19755467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs7090394	chr10:19755511-19755512	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs207470735	chr10:19755516-19755517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs561262561	chr10:19755518-19755519	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs144393594	chr10:19755542-19755543	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs113003301	chr10:19755559-19755560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs562768277	chr10:19755666-19755667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs538729175	chr10:19755679-19755680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs34866604	chr10:19755690-19755691	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs7093985	chr10:19755705-19755706	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs187278048	chr10:19755710-19755711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs528599878	chr10:19755716-19755717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs558590489	chr10:19755726-19755727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs7081165	chr10:19755731-19755732	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs564938312	chr10:19755732-19755733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs541177410	chr10:19755748-19755749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs571914820	chr10:19755755-19755756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs547882353	chr10:19755778-19755779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs7077661	chr10:19755798-19755799	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs569517256	chr10:19755834-19755835	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs536472890	chr10:19755838-19755839	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs540829647	chr10:19755914-19755915	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs573733097	chr10:19755919-19755920	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs566917870	chr10:19755946-19755947	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19740000-19781200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr10:19751400-19777600	Weak transcription	Fetal Intestine Large	intestine
3	chr10:19754800-19755800	Weak transcription	Fetal Intestine Small	intestine
4	chr10:19755800-19756200	Strong transcription	Fetal Intestine Small	intestine
5	chr10:19756200-19777600	Weak transcription	Fetal Intestine Small	intestine

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