Variant report

Variant	nsv975766
Chromosome Location	chr10:19842314-19854108
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 522 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:522 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs368303770	chr10:19842319-19842320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs147717629	chr10:19842341-19842342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs372255115	chr10:19842372-19842373	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs11010325	chr10:19842386-19842387	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs552650919	chr10:19842395-19842396	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs190855333	chr10:19842432-19842433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs538267739	chr10:19842474-19842475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs562082953	chr10:19842492-19842493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs556870875	chr10:19842519-19842520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs575462721	chr10:19842555-19842556	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs542889565	chr10:19842564-19842565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs561092545	chr10:19842603-19842604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs573068247	chr10:19842606-19842607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs78522174	chr10:19842659-19842660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs72780153	chr10:19842717-19842718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs142575267	chr10:19842726-19842727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs557066251	chr10:19842751-19842752	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs533417518	chr10:19842781-19842782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs576553931	chr10:19842782-19842783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs369854932	chr10:19842789-19842790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs563667091	chr10:19842794-19842795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs142447426	chr10:19842811-19842812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs151319500	chr10:19842857-19842858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs371900233	chr10:19842885-19842886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs543957493	chr10:19842913-19842914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs374916163	chr10:19842973-19842974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs34377742	chr10:19843043-19843044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs528655152	chr10:19843075-19843076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs113105080	chr10:19843104-19843105	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs140619269	chr10:19843106-19843107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs183720686	chr10:19843122-19843123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs188255720	chr10:19843137-19843138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs556714646	chr10:19843162-19843163	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs73595840	chr10:19843181-19843182	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs536197001	chr10:19843189-19843190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs11595212	chr10:19843199-19843200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs554891014	chr10:19843224-19843225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs573134429	chr10:19843235-19843236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs540430541	chr10:19843238-19843239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs150077265	chr10:19843343-19843344	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs138530125	chr10:19843350-19843351	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs140287773	chr10:19843371-19843372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs563561845	chr10:19843389-19843390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs112581824	chr10:19843405-19843406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs7906298	chr10:19843433-19843434	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs542994331	chr10:19843447-19843448	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs541776713	chr10:19843504-19843505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs561258310	chr10:19843506-19843507	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs528715367	chr10:19843532-19843533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs145388614	chr10:19843541-19843542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19839800-19875400	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19840400-19856400	Weak transcription	Fetal Intestine Large	intestine
3	chr10:19850000-19850200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:19850200-19850800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:19850400-19850600	Enhancers	Fetal Brain Male	brain
6	chr10:19850800-19851600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:19851600-19858800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:19852400-19852800	Enhancers	Brain Germinal Matrix	brain
9	chr10:19852400-19853000	Enhancers	Aorta	Aorta
10	chr10:19852600-19853000	Enhancers	Fetal Brain Male	brain
11	chr10:19853000-19866400	Weak transcription	Aorta	Aorta

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