Variant report

Variant	nsv975785
Chromosome Location	chr10:93501141-93525212
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:93168502..93170905-chr10:93500372..93503062,3	MCF-7	breast:
2	chr10:93499838..93502353-chr10:93502549..93505542,2	MCF-7	breast:
3	chr10:93412859..93415142-chr10:93505116..93507347,2	MCF-7	breast:
4	chr10:93517982..93519871-chr10:93667537..93669096,2	MCF-7	breast:
5	chr10:93503756..93506053-chr10:93508212..93510590,3	MCF-7	breast:
6	chr10:93518180..93519047-chr10:93672190..93673222,5	MCF-7	breast:
7	chr10:93058035..93058543-chr10:93518214..93518833,2	MCF-7	breast:
8	chr10:93521788..93523515-chr10:93526301..93527901,2	MCF-7	breast:
9	chr10:93311487..93312272-chr10:93504776..93505607,2	MCF-7	breast:
10	chr10:93517264..93519065-chr10:93684545..93687279,2	MCF-7	breast:
11	chr10:93345296..93347976-chr10:93501392..93503311,2	K562	blood:
12	chr10:93499838..93502353-chr10:93502549..93505542,2	MCF-7	breast:
13	chr10:93503756..93506053-chr10:93508212..93510590,3	MCF-7	breast:
14	chr10:93516701..93519055-chr10:93667425..93669628,2	MCF-7	breast:
15	chr10:93514473..93516861-chr10:93537437..93539796,2	MCF-7	breast:
16	chr10:93507039..93510554-chr10:93666843..93669404,3	MCF-7	breast:
17	chr10:93517456..93519082-chr10:93556327..93558559,2	MCF-7	breast:
18	chr10:93518369..93520952-chr10:93556310..93558590,3	MCF-7	breast:
19	chr10:93523978..93526476-chr10:93736628..93739211,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000174721	chromatin interactions
ENSG00000107854	chromatin interactions
ENSG00000272817	chromatin interactions
ENSG00000228701	chromatin interactions
ENSG00000228759	chromatin interactions
ENSG00000165338	chromatin interactions

Extended variants
information (count: 600 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:600 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs118021499	chr10:93501155-93501156	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs565087706	chr10:93501157-93501158	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs115165246	chr10:93501174-93501175	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs183652625	chr10:93501182-93501183	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs566256645	chr10:93501192-93501193	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs567725513	chr10:93501196-93501197	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs138305133	chr10:93501228-93501229	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs188017302	chr10:93501239-93501240	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs569180690	chr10:93501252-93501253	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs538088130	chr10:93501265-93501266	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs56684777	chr10:93501294-93501295	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs577529592	chr10:93501304-93501305	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs181956277	chr10:93501306-93501307	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs554364573	chr10:93501358-93501359	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs553615000	chr10:93501407-93501408	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs573680246	chr10:93501447-93501448	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs542856317	chr10:93501457-93501458	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs535269528	chr10:93501461-93501462	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs2901505	chr10:93501469-93501470	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs576331452	chr10:93501485-93501486	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs545269352	chr10:93501525-93501526	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs149625359	chr10:93501541-93501542	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs527711709	chr10:93501543-93501544	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs531062097	chr10:93501562-93501563	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs542307325	chr10:93501604-93501605	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs74230686	chr10:93501658-93501659	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs143340656	chr10:93501689-93501690	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs562195635	chr10:93501706-93501707	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs549199253	chr10:93501707-93501708	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs569042826	chr10:93501779-93501780	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs572525728	chr10:93501803-93501804	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs538151369	chr10:93501815-93501816	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs551419027	chr10:93501843-93501844	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs10881957	chr10:93501876-93501877	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs10881958	chr10:93501997-93501998	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
36	rs553723052	chr10:93502035-93502036	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs11186676	chr10:93502063-93502064	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs117011235	chr10:93502071-93502072	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs373938528	chr10:93502142-93502143	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs540161164	chr10:93502152-93502153	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs556362724	chr10:93502178-93502179	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs572617993	chr10:93502193-93502194	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs576197398	chr10:93502210-93502211	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs186175263	chr10:93502212-93502213	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs559032853	chr10:93502220-93502221	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs572688595	chr10:93502280-93502281	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs190397535	chr10:93502308-93502309	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs2153654	chr10:93502329-93502330	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs371570584	chr10:93502443-93502444	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs530237072	chr10:93502517-93502518	Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93500600-93504600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93500800-93501600	Enhancers	Fetal Lung	lung
3	chr10:93500800-93502000	Enhancers	Liver	Liver
4	chr10:93501000-93501200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:93501000-93501400	Enhancers	Stomach Smooth Muscle	stomach
6	chr10:93501000-93501800	Enhancers	Fetal Stomach	stomach
7	chr10:93501200-93501400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:93501200-93501400	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr10:93501200-93505200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:93501400-93502400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:93501600-93502600	Weak transcription	Fetal Lung	lung
12	chr10:93502000-93502200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr10:93502000-93502600	Enhancers	Fetal Kidney	kidney
14	chr10:93502000-93502800	Flanking Active TSS	Liver	Liver
15	chr10:93502200-93502400	Enhancers	Stomach Mucosa	stomach
16	chr10:93502400-93504600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:93502600-93502800	Enhancers	Fetal Lung	lung
18	chr10:93502800-93504800	Enhancers	Liver	Liver
19	chr10:93503200-93503400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr10:93503200-93503600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr10:93503400-93504600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:93503600-93504800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr10:93504400-93504600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:93504600-93504800	Active TSS	H9 Cell Line	embryonic stem cell
25	chr10:93504600-93504800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:93504600-93504800	Enhancers	HMEC	breast
27	chr10:93504600-93505000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:93504600-93505200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:93504600-93505200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr10:93504600-93505200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:93504600-93505200	Enhancers	Right Atrium	heart
32	chr10:93504600-93505400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:93504600-93505400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:93504600-93505400	Enhancers	Placenta	Placenta
35	chr10:93504800-93505000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
36	chr10:93504800-93505000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
37	chr10:93504800-93505000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
38	chr10:93504800-93505000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr10:93504800-93505000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:93504800-93505000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:93504800-93505000	Flanking Active TSS	A549	lung
42	chr10:93504800-93505000	Flanking Bivalent TSS/Enh	HepG2	liver
43	chr10:93504800-93505000	Flanking Active TSS	NHEK	skin
44	chr10:93504800-93505000	Flanking Active TSS	Osteobl	bone
45	chr10:93504800-93505200	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr10:93504800-93505200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr10:93504800-93505200	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr10:93504800-93505200	Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr10:93504800-93505200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
50	chr10:93504800-93505200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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