Variant report

Variant	nsv975801
Chromosome Location	chr10:90938921-90957541
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90807595..90810361-chr10:90944518..90946449,2	MCF-7	breast:

Extended variants
information (count: 395 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:395 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs183019746	chr10:90938956-90938957	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs113142857	chr10:90939047-90939048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs142090068	chr10:90939049-90939050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs550198045	chr10:90939065-90939066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs529130216	chr10:90939078-90939079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs187715614	chr10:90939102-90939103	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568996887	chr10:90939176-90939177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs539179563	chr10:90939199-90939200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs557784688	chr10:90939205-90939206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs147804086	chr10:90939297-90939298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs141086206	chr10:90939361-90939362	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs555402196	chr10:90939377-90939378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs375399867	chr10:90939387-90939388	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs113891706	chr10:90939388-90939389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs373423186	chr10:90939398-90939399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs373173019	chr10:90939492-90939493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs551010844	chr10:90939541-90939542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs11203012	chr10:90939543-90939544	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs71717661	chr10:90939549-90939550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs150619059	chr10:90939552-90939553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs557288197	chr10:90939598-90939599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs191344890	chr10:90939605-90939606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs568112709	chr10:90939765-90939766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs147635384	chr10:90939766-90939767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs142314136	chr10:90939770-90939771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs370143279	chr10:90939785-90939786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs564643572	chr10:90939789-90939790	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs114948187	chr10:90939871-90939872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs73368243	chr10:90939907-90939908	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs111768425	chr10:90939919-90939920	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs561730955	chr10:90939939-90939940	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs529164002	chr10:90939975-90939976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs77740511	chr10:90939983-90939984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs2841031	chr10:90940003-90940004	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
35	rs112003789	chr10:90940084-90940085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs554334914	chr10:90940085-90940086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs551279844	chr10:90940154-90940155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs566611443	chr10:90940166-90940167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs533853672	chr10:90940176-90940177	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs12253799	chr10:90940193-90940194	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs73368245	chr10:90940221-90940222	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs567729121	chr10:90940230-90940231	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs536178415	chr10:90940250-90940251	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs557586730	chr10:90940272-90940273	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs150137349	chr10:90940285-90940286	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs540070307	chr10:90940288-90940289	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs138563248	chr10:90940296-90940297	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184621222	chr10:90940305-90940306	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs553352005	chr10:90940310-90940311	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs2841029	chr10:90940325-90940326	ZNF genes & repeats Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90936200-90940200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:90936200-90942800	Weak transcription	NHDF-Ad	bronchial
3	chr10:90940200-90940600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:90940600-90943000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:90942600-90943800	Enhancers	NHLF	lung
6	chr10:90942600-90944000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:90942800-90944000	Enhancers	NHDF-Ad	bronchial
8	chr10:90943000-90943800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:90943000-90944200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:90943200-90944400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:90943400-90943800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:90943600-90943800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:90943600-90944000	Enhancers	HMEC	breast
14	chr10:90943600-90945000	Enhancers	Osteobl	bone
15	chr10:90943800-90944200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:90943800-90945400	Weak transcription	NHLF	lung
17	chr10:90944000-90945200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:90944400-90949400	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:90945200-90945800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:90945200-90946000	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:90945400-90945600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:90945400-90945800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr10:90945400-90945800	Enhancers	Hela-S3	cervix
24	chr10:90945400-90946600	Enhancers	Fetal Lung	lung
25	chr10:90945600-90945800	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr10:90945600-90945800	Enhancers	NHLF	lung
27	chr10:90945600-90946000	Enhancers	Colon Smooth Muscle	Colon
28	chr10:90945600-90946000	Bivalent Enhancer	Stomach Mucosa	stomach
29	chr10:90946200-90947200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr10:90946400-90946800	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr10:90946400-90947000	Enhancers	H1 Cell Line	embryonic stem cell
32	chr10:90946400-90947000	Enhancers	H9 Cell Line	embryonic stem cell
33	chr10:90955200-90956000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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