Variant report

Variant	nsv975821
Chromosome Location	chr10:110362115-110404095
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:110367562..110370011-chr10:110375438..110378123,2	K562	blood:
2	chr10:110367562..110370011-chr10:110375438..110378123,2	K562	blood:
3	chr10:110379538..110381981-chr10:110384603..110386733,2	MCF-7	breast:
4	chr10:110379538..110381981-chr10:110384603..110386733,2	MCF-7	breast:

Extended variants
information (count: 802 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:802 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542934718	chr10:110362138-110362139	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs567658132	chr10:110362145-110362146	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs534063118	chr10:110362161-110362162	Enhancers Active TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs542362146	chr10:110362230-110362231	Active TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs372293641	chr10:110362232-110362233	Active TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs570761771	chr10:110362277-110362278	Active TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs191336705	chr10:110362301-110362302	Active TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs369644005	chr10:110362354-110362355	Active TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs377511606	chr10:110362366-110362367	Active TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs2497170	chr10:110362379-110362380	Active TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs184477479	chr10:110362396-110362397	Active TSS	n/a	n/a	Overlapped CNVs	n/a
12	rs190538231	chr10:110362407-110362408	Active TSS	n/a	n/a	Overlapped CNVs	n/a
13	rs113300452	chr10:110362484-110362485	Active TSS	n/a	n/a	Overlapped CNVs	n/a
14	rs142663123	chr10:110362533-110362534	Active TSS	n/a	n/a	Overlapped CNVs	n/a
15	rs4537698	chr10:110362617-110362618	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs146898789	chr10:110362691-110362692	Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs377417706	chr10:110362695-110362696	Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs182324498	chr10:110362697-110362698	Active TSS	n/a	n/a	Overlapped CNVs	n/a
19	rs73416669	chr10:110362703-110362704	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs151319275	chr10:110362705-110362706	Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs538820061	chr10:110362742-110362743	Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs370799731	chr10:110362812-110362813	Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs140716230	chr10:110362813-110362814	Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs567876470	chr10:110362851-110362852	Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs545248545	chr10:110362925-110362926	Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs75290863	chr10:110362979-110362980	Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs77823275	chr10:110362984-110362985	Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs11592603	chr10:110362988-110362989	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs185245379	chr10:110363012-110363013	Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs73416671	chr10:110363077-110363078	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs138555849	chr10:110363125-110363126	Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs190019545	chr10:110363135-110363136	Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs113096482	chr10:110363166-110363167	Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs67033668	chr10:110363177-110363178	Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs535515176	chr10:110363186-110363187	Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs373446467	chr10:110363212-110363213	Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs34471968	chr10:110363240-110363241	Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs12221068	chr10:110363243-110363244	Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs11599175	chr10:110363246-110363247	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs181084333	chr10:110363258-110363259	Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs373406728	chr10:110363282-110363283	Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs145490687	chr10:110363283-110363284	Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs11599195	chr10:110363291-110363292	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs373331192	chr10:110363303-110363304	Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs546477601	chr10:110363364-110363365	Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs562513796	chr10:110363439-110363440	Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs185790077	chr10:110363442-110363443	Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs12777014	chr10:110363455-110363456	Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs561827587	chr10:110363464-110363465	Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs527835435	chr10:110363474-110363475	Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
renal hypoplasia	20603712	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Myxofibrosarcoma	16751306	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	16616336	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Barrett''s syndrome	19417022	CNVD
Sezary syndrome	18413736	CNVD

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110356600-110362200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:110360600-110365000	Active TSS	GM12878-XiMat	blood
3	chr10:110374200-110374800	Enhancers	Fetal Stomach	stomach
4	chr10:110375000-110375200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:110376600-110377200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:110380600-110381200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:110384800-110385200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:110385200-110389200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:110386600-110386800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:110389000-110390200	Enhancers	Liver	Liver
11	chr10:110389000-110395000	Enhancers	Fetal Lung	lung
12	chr10:110389200-110391800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:110389400-110390000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:110389800-110392400	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:110390000-110392800	Enhancers	GM12878-XiMat	blood
16	chr10:110390600-110392400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:110391400-110392400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:110392400-110394000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:110392400-110394200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:110394000-110394400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:110394000-110394400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:110394200-110394600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:110395000-110395400	Weak transcription	Fetal Lung	lung
24	chr10:110395200-110397600	Weak transcription	Fetal Heart	heart
25	chr10:110395400-110395600	Enhancers	Fetal Lung	lung
26	chr10:110395600-110398200	Weak transcription	Fetal Lung	lung
27	chr10:110397800-110398000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:110398200-110399000	Enhancers	Fetal Lung	lung

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