Variant report

Variant	nsv975856
Chromosome Location	chr11:84352532-84355809
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:84353205..84353720-chr11:84425398..84425994,2	MCF-7	breast:
2	chr11:84353266..84354226-chr11:84425005..84426301,12	MCF-7	breast:

Extended variants
information (count: 166 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:166 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs148459088	chr11:84352567-84352568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs114886252	chr11:84352585-84352586	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs573607135	chr11:84352587-84352588	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs141726039	chr11:84352601-84352602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs564450163	chr11:84352617-84352618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs147490192	chr11:84352624-84352625	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs546995306	chr11:84352637-84352638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs568430666	chr11:84352648-84352649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs535931492	chr11:84352656-84352657	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs542660722	chr11:84352680-84352681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs115610919	chr11:84352693-84352694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs188339571	chr11:84352715-84352716	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs554277718	chr11:84352721-84352722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs12281869	chr11:84352726-84352727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs573177349	chr11:84352750-84352751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs575981147	chr11:84352779-84352780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs139970939	chr11:84352847-84352848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs181828437	chr11:84352873-84352874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs76349770	chr11:84352874-84352875	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs573589674	chr11:84352880-84352881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs544292339	chr11:84352906-84352907	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs372673425	chr11:84352967-84352968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs540192289	chr11:84352975-84352976	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs186365433	chr11:84352983-84352984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs375123787	chr11:84352998-84352999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs545992021	chr11:84353005-84353006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs532367927	chr11:84353030-84353031	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs545866573	chr11:84353031-84353032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs189594917	chr11:84353032-84353033	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs563640312	chr11:84353049-84353050	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs199734251	chr11:84353050-84353051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs12270129	chr11:84353051-84353052	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs79487800	chr11:84353062-84353063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs527784950	chr11:84353063-84353064	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs61899003	chr11:84353064-84353065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs551082745	chr11:84353077-84353078	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs11827055	chr11:84353078-84353079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs567591963	chr11:84353103-84353104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs551622490	chr11:84353106-84353107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs566738322	chr11:84353107-84353108	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs34760163	chr11:84353108-84353109	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs555423030	chr11:84353109-84353110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs184975348	chr11:84353110-84353111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs537453124	chr11:84353112-84353113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs79160246	chr11:84353125-84353126	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs555795030	chr11:84353127-84353128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs34226746	chr11:84353135-84353136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs371336603	chr11:84353136-84353137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs577342601	chr11:84353152-84353153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs545955275	chr11:84353158-84353159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17899364	CNVD
Breast cancer	17157792	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Ovarian neoplasms	16753589	CNVD
Breast cancer	16608533	CNVD
Ovarian cancer	20844748	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Colorectal cancer	16912164	CNVD
Mental retardation	17847001	CNVD
Melanoma	19509136	CNVD
Sudden cardiac death	19188705	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Cancer	20164920	CNVD
Obesity	20622171	CNVD
Breast cancer	22522925	CNVD
Developmental delay	21147756	CNVD
Bipolar disorder	19114987	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Ductal carcinoma	22052326	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Breast cancer	17142309	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:84349600-84366800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:84355800-84356200	Enhancers	H1 Cell Line	embryonic stem cell

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