Variant report
| Variant | nsv975911 |
|---|---|
| Chromosome Location | chr11:49154032-49155774 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FOLH1-1 | chr11:49155205-49156352 | NONHSAT021310 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs189900996 | chr11:49155208-49155209 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs531152989 | chr11:49155222-49155223 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs181544848 | chr11:49155225-49155226 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs537695575 | chr11:49155227-49155228 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs567366809 | chr11:49155231-49155232 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs73473134 | chr11:49155287-49155288 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 7 | rs546573736 | chr11:49155346-49155347 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs61885250 | chr11:49155391-49155392 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 9 | rs1330030 | chr11:49155425-49155426 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 10 | rs544600713 | chr11:49155438-49155439 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs186199428 | chr11:49155460-49155461 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs568665051 | chr11:49155475-49155476 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs527472820 | chr11:49155504-49155505 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs61885251 | chr11:49155555-49155556 | Inactive region | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 15 | rs554508294 | chr11:49155592-49155593 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 16 | rs151315087 | chr11:49155594-49155595 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 17 | rs140643213 | chr11:49155616-49155617 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 18 | rs553385400 | chr11:49155630-49155631 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 19 | rs111519752 | chr11:49155651-49155652 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 20 | rs374390684 | chr11:49155706-49155707 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 21 | rs545691295 | chr11:49155739-49155740 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
| 22 | rs565582952 | chr11:49155750-49155751 | Inactive region | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:49)
| Disease | PMID | Source |
|---|---|---|
| Chordoma | 21602918 | CNVD |
| Breast cancer | 21949216 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 19222835 | CNVD |
| T-cell acute lymphoblastic leukemia | 20065082 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Beckwith-Wiedemann syndrome | 21518781 | CNVD |
| Wilms tumour | 21518781 | CNVD |
| Hepatoblastoma | 21518781 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Gastrointestinal stromal cancer | 17535989 | CNVD |
| Paraganglioma | 17535989 | CNVD |
| Pulmonary chondroma | 17535989 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Multiple myeloma | 20724749 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Autism | 22495311 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Non-small cell lung cancer | 21385341 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Potocki-Shaffer syndrome | 19222835 | CNVD |
| WAGR syndrome | 19222835 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Colorectal cancer | 21128281 | CNVD |
| Glioblastoma multiforme | 21138945 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Acute lymphoblastic leukemia | 22581003 | CNVD |
| Breast cancer | 21990379 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Intellectual disability | 22045946 | CNVD |
| small cell lung cancer | 17426248 | CNVD |
| Melanoma | 20877625 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Breast cancer | 22522925 | CNVD |
Chromatin state (count:0 , 50 per page) page:
| No data |
