Variant report

Variant	nsv975932
Chromosome Location	chr11:58009747-58010558
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR10Q1-2	chr11:58009515-58010569	NONHSAT021466

Extended variants
information (count: 42 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543831020	chr11:58009749-58009750	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs565612282	chr11:58009763-58009764	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs532833445	chr11:58009788-58009789	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs548032581	chr11:58009867-58009868	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs559857153	chr11:58009876-58009877	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs374086997	chr11:58009887-58009888	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs191341976	chr11:58009920-58009921	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs58028384	chr11:58009926-58009927	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs569640202	chr11:58009927-58009928	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs141900585	chr11:58009943-58009944	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs551731392	chr11:58009948-58009949	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs570433176	chr11:58009950-58009951	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs534567874	chr11:58009960-58009961	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs552904780	chr11:58009977-58009978	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs574530636	chr11:58010027-58010028	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs535290820	chr11:58010047-58010048	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs113904834	chr11:58010136-58010137	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs555088795	chr11:58010146-58010147	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs576445570	chr11:58010166-58010167	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs543867228	chr11:58010192-58010193	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs146269172	chr11:58010210-58010211	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs577621550	chr11:58010223-58010224	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs541698631	chr11:58010247-58010248	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs542266016	chr11:58010270-58010271	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs79213530	chr11:58010290-58010291	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs183301055	chr11:58010298-58010299	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs12281728	chr11:58010301-58010302	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs10750890	chr11:58010309-58010310	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs568539880	chr11:58010316-58010317	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs551768040	chr11:58010330-58010331	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs187794949	chr11:58010357-58010358	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs10896723	chr11:58010380-58010381	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs546922255	chr11:58010427-58010428	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs1938658	chr11:58010432-58010433	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs10750891	chr11:58010439-58010440	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs556857542	chr11:58010446-58010447	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs570186397	chr11:58010466-58010467	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs539743729	chr11:58010489-58010490	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs12281837	chr11:58010507-58010508	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs1938657	chr11:58010513-58010514	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs12294625	chr11:58010526-58010527	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs569826424	chr11:58010531-58010532	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Autism	22495309	CNVD
Autism	20808228	CNVD
Breast cancer	17142309	CNVD
Melanoma	17363583	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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