Variant report

Variant	nsv975939
Chromosome Location	chr11:63094973-63109694
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63103438..63104964-chr14:78144218..78145718,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC22A9-1	chr11:63093324-63095856	l_488_chr11:63090922-63093361_brain

Extended variants
information (count: 40 )
Associated
traits (count: 77 )

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs568274056	chr11:63094995-63094996	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs550789748	chr11:63095010-63095011	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs60651861	chr11:63095011-63095012	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs397811863	chr11:63095020-63095021	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs143115821	chr11:63095028-63095029	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs550739210	chr11:63095051-63095052	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs78601591	chr11:63095066-63095067	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs539518470	chr11:63095081-63095082	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs552554587	chr11:63095093-63095094	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs566092325	chr11:63095133-63095134	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs1723204	chr11:63095136-63095137	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs535762551	chr11:63095148-63095149	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs555612793	chr11:63095203-63095204	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs148325288	chr11:63095310-63095311	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs184444119	chr11:63095333-63095334	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs375647558	chr11:63095352-63095353	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs1193787	chr11:63095411-63095412	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs578070124	chr11:63095455-63095456	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs540674763	chr11:63095460-63095461	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs188931814	chr11:63095483-63095484	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs1723205	chr11:63095513-63095514	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs558522487	chr11:63095521-63095522	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs117031593	chr11:63095546-63095547	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs561988563	chr11:63095595-63095596	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs1193786	chr11:63095619-63095620	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs550551390	chr11:63095653-63095654	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs570581895	chr11:63095691-63095692	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs372330125	chr11:63095722-63095723	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs532896550	chr11:63095726-63095727	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs193295183	chr11:63095741-63095742	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs185560472	chr11:63095749-63095750	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs535108546	chr11:63095750-63095751	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs554928058	chr11:63095761-63095762	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs569490409	chr11:63095783-63095784	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs538527594	chr11:63095796-63095797	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs369832221	chr11:63095805-63095806	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs558071042	chr11:63095821-63095822	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs578092092	chr11:63095830-63095831	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs370608412	chr11:63095831-63095832	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs554278917	chr11:63095838-63095839	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:77)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Glioblastoma multiforme	21138945	CNVD
Acute myeloid leukemia	20729466	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Pituitary adenoma	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	21080181	CNVD
Smith-Lemli-Opitz syndrome	21572526	CNVD
Multiple myeloma	16461302	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelofibrosis	22110671	CNVD
Metanephric adenoma	20802469	CNVD
Chordoma	21602918	CNVD
Melanoma	18172304	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
ovarian endometriomas	16273235	CNVD
Breast cancer	21785460	CNVD
Breast cancer	20409316	CNVD
Spinal muscular atrophy	17160897	CNVD
Retinitis pigmentosa	17160897	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	16417655	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	17217626	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Breast cancer	21045282	CNVD
Breast cancer	21806811	CNVD
Breast cancer	22002566	CNVD
Ductal carcinoma	18381933	CNVD
Retinoblastoma	22278416	CNVD
Breast cancer	20953835	CNVD
oto-dental syndrome	17656375	CNVD
Asthma	21956041	CNVD
Breast cancer	17603634	CNVD
Ovarian neoplasms	16753589	CNVD
Non-small cell lung cancer	20864512	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cervical cancer	21062161	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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