Variant report

Variant	nsv976142
Chromosome Location	chr13:92492782-92567759
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GPC6-3	chr13:92508013-92508180	NONHSAT034698
2	lnc-GPC6-3	chr13:92506911-92506952	NONHSAT034698

Extended variants
information (count: 850 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:850 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs377552263	chr13:92495213-92495214	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs1537026	chr13:92495272-92495273	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs550744091	chr13:92495326-92495327	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs533298156	chr13:92495335-92495336	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs145677851	chr13:92495351-92495352	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs180891325	chr13:92495380-92495381	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs138337525	chr13:92495385-92495386	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs566632167	chr13:92495401-92495402	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs538558900	chr13:92495426-92495427	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs184635528	chr13:92495431-92495432	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs142725271	chr13:92495467-92495468	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs537844548	chr13:92495476-92495477	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs554670311	chr13:92495491-92495492	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs189853606	chr13:92495556-92495557	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs545322704	chr13:92506941-92506942	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs563175936	chr13:92508028-92508029	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs192002439	chr13:92508079-92508080	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs12865389	chr13:92508085-92508086	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs116876230	chr13:92508138-92508139	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs565762782	chr13:92508139-92508140	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs150754432	chr13:92508168-92508169	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs74987090	chr13:92527228-92527229	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs79270152	chr13:92527252-92527253	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs576361557	chr13:92527260-92527261	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs535609265	chr13:92527296-92527297	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs555845657	chr13:92527311-92527312	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs375699553	chr13:92527380-92527381	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs148536350	chr13:92527391-92527392	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs564297458	chr13:92527489-92527490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs577955945	chr13:92527491-92527492	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs543706340	chr13:92527506-92527507	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs562174607	chr13:92527530-92527531	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs141815528	chr13:92527541-92527542	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs547845079	chr13:92527547-92527548	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs561843053	chr13:92527558-92527559	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs527349878	chr13:92527642-92527643	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs550629664	chr13:92527643-92527644	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs1330472	chr13:92527649-92527650	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs570652155	chr13:92527650-92527651	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs185985911	chr13:92527651-92527652	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs192236475	chr13:92527680-92527681	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs7328310	chr13:92527724-92527725	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs569648137	chr13:92527778-92527779	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs555425436	chr13:92527836-92527837	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs572509838	chr13:92527843-92527844	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs534782467	chr13:92528015-92528016	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs557978692	chr13:92528106-92528107	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs150613781	chr13:92528142-92528143	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs183705284	chr13:92528187-92528188	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs557654025	chr13:92528239-92528240	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Medulloblastoma	19270706	CNVD
Myelofibrosis	22110671	CNVD
coloboma	21285886	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	19759907	CNVD
Wilms tumour	21544195	CNVD
Acute myeloid leukemia	19651601	CNVD
Effusion lymphoma	18079361	CNVD
Developmental delay	21147756	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92495200-92495600	Enhancers	Colon Smooth Muscle	Colon
2	chr13:92527200-92528200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:92528000-92528600	Enhancers	Primary hematopoietic stem cells	blood
4	chr13:92528400-92528800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr13:92535400-92535800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:92538400-92543400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:92540800-92541400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:92542400-92542800	Enhancers	Liver	Liver
9	chr13:92542400-92542800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr13:92542400-92543800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr13:92542400-92544000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr13:92543000-92543600	Enhancers	Primary hematopoietic stem cells	blood
13	chr13:92543400-92543800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:92543600-92550400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr13:92546400-92547400	Enhancers	HUVEC	blood vessel
16	chr13:92546800-92547600	Enhancers	Fetal Muscle Leg	muscle
17	chr13:92547400-92548600	Weak transcription	HUVEC	blood vessel
18	chr13:92548600-92550000	Enhancers	HUVEC	blood vessel
19	chr13:92550000-92552200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr13:92550400-92551000	Enhancers	Primary hematopoietic stem cells	blood
21	chr13:92550800-92551800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr13:92555600-92557400	Enhancers	HUVEC	blood vessel
23	chr13:92556200-92557200	Enhancers	GM12878-XiMat	blood
24	chr13:92557400-92558400	Weak transcription	HUVEC	blood vessel
25	chr13:92558200-92558600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr13:92558400-92559000	Enhancers	HUVEC	blood vessel
27	chr13:92559000-92559600	Weak transcription	HUVEC	blood vessel
28	chr13:92559600-92560000	Enhancers	HUVEC	blood vessel
29	chr13:92560000-92560600	Flanking Active TSS	HUVEC	blood vessel
30	chr13:92560600-92561400	Active TSS	HUVEC	blood vessel
31	chr13:92565600-92566200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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