Variant report

Variant	nsv976260
Chromosome Location	chr13:66894108-66899792
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL445989.1-13	chr13:66897306-66897693	ENSG00000234527.1

Extended variants
information (count: 124 )
Associated
traits (count: 96 )

Variant overlapped rSNPs/rCNVs (count:124 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs145436661	chr13:66896427-66896428	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs552271285	chr13:66896438-66896439	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs570962740	chr13:66896489-66896490	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs547519853	chr13:66896511-66896512	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs17501046	chr13:66896512-66896513	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs539482185	chr13:66896528-66896529	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs549531057	chr13:66896543-66896544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs569608789	chr13:66896544-66896545	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs116750913	chr13:66896552-66896553	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs555689412	chr13:66896581-66896582	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs572316744	chr13:66896603-66896604	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs534814472	chr13:66896663-66896664	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs568276565	chr13:66896675-66896676	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs190262073	chr13:66896698-66896699	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs543871225	chr13:66896709-66896710	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs563561923	chr13:66896710-66896711	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs573684015	chr13:66896769-66896770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs535764294	chr13:66896788-66896789	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs548043372	chr13:66896823-66896824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs542956411	chr13:66896842-66896843	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs148406070	chr13:66896854-66896855	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs528715481	chr13:66896879-66896880	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs551695136	chr13:66896930-66896931	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs371721368	chr13:66896931-66896932	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs144012123	chr13:66896941-66896942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs566221317	chr13:66896942-66896943	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs146453607	chr13:66896961-66896962	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs146267144	chr13:66896975-66896976	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs533819671	chr13:66897008-66897009	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs535440162	chr13:66897013-66897014	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs548951999	chr13:66897016-66897017	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs201426033	chr13:66897042-66897043	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs565990183	chr13:66897044-66897045	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs267316	chr13:66897047-66897048	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs528964728	chr13:66897086-66897087	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs182147514	chr13:66897131-66897132	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs113433334	chr13:66897136-66897137	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs577746209	chr13:66897150-66897151	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs537184765	chr13:66897248-66897249	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs561380777	chr13:66897267-66897268	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs565380691	chr13:66897305-66897306	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs573747203	chr13:66897357-66897358	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
43	rs542617222	chr13:66897383-66897384	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
44	rs559285852	chr13:66897400-66897401	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
45	rs368827734	chr13:66897401-66897402	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
46	rs545660846	chr13:66897427-66897428	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
47	rs565371649	chr13:66897464-66897465	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
48	rs531123582	chr13:66897510-66897511	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
49	rs543198603	chr13:66897543-66897544	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a
50	rs34868619	chr13:66897590-66897591	Enhancers	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:96)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	17245344	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Merkel cell carcinoma	19020549	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Colorectal cancer	16774939	CNVD
Adenoid cystic carcinoma	17372589	CNVD
abnormal development	18461090	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Prostate cancer	16461572	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Schizophrenia	23813976	CNVD
Prostate cancer	22341455	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:66896400-66898600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr13:66896400-66898800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:66897200-66897400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr13:66897200-66898400	Enhancers	Rectal Smooth Muscle	rectum
5	chr13:66898000-66898200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:66898000-66898400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr13:66898000-66898600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:66898600-66903400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:66898800-66903400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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