Variant report

Variant	nsv976262
Chromosome Location	chr13:96918599-96924766
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 215 )
Associated
traits (count: 82 )

Variant overlapped rSNPs/rCNVs (count:215 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs539244624	chr13:96918653-96918654	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs562482958	chr13:96918698-96918699	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs531242594	chr13:96918725-96918726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs548274096	chr13:96918765-96918766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs1927796	chr13:96918833-96918834	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs115592483	chr13:96918876-96918877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs547226278	chr13:96918894-96918895	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs2104657	chr13:96918935-96918936	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs543797239	chr13:96918967-96918968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs76644756	chr13:96919036-96919037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs182461291	chr13:96919042-96919043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs186756397	chr13:96919045-96919046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs569224131	chr13:96919123-96919124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs537854736	chr13:96919139-96919140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs143970598	chr13:96919180-96919181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs144519516	chr13:96919183-96919184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs148426117	chr13:96919186-96919187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs190749955	chr13:96919200-96919201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs182889408	chr13:96919260-96919261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs546069512	chr13:96919300-96919301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs142540594	chr13:96919301-96919302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs575946379	chr13:96919306-96919307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs541868286	chr13:96919309-96919310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs561731396	chr13:96919328-96919329	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs539263630	chr13:96919392-96919393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs547541148	chr13:96919467-96919468	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs560731158	chr13:96919582-96919583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs9513119	chr13:96919602-96919603	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs188593674	chr13:96919631-96919632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs569474750	chr13:96919641-96919642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs571100760	chr13:96919651-96919652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs537816590	chr13:96919692-96919693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs548965770	chr13:96919693-96919694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs559303354	chr13:96919783-96919784	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs7317783	chr13:96919785-96919786	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs139797027	chr13:96919898-96919899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs528058927	chr13:96919913-96919914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs551381530	chr13:96919942-96919943	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs534026906	chr13:96919960-96919961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs192565845	chr13:96919969-96919970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs576929068	chr13:96919983-96919984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs539259869	chr13:96919994-96919995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs183521517	chr13:96920057-96920058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs9556537	chr13:96920062-96920063	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs143520801	chr13:96920079-96920080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs561644618	chr13:96920105-96920106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs373598763	chr13:96920110-96920111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs146750516	chr13:96920113-96920114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs551198722	chr13:96920155-96920156	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs564032223	chr13:96920228-96920229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:82)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Myoepithelioma	18604193	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	18632612	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Metanephric adenoma	20802469	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Rhabdomyosarcoma	17210683	CNVD
Wilms tumour	21544195	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Breast cancer	17603634	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Thyroid cancer	19087340	CNVD
abortions and stillbirths	19751515	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute myeloid leukemia	19651601	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Burkitt''s lymphoma	20823134	CNVD
Basal cell lymphoma	21115979	CNVD

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96918000-96918600	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr13:96918600-96922200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr13:96921800-96925200	Enhancers	Fetal Intestine Large	intestine
4	chr13:96922200-96922600	Enhancers	Pancreas	Pancrea
5	chr13:96922200-96922800	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr13:96922200-96924800	Enhancers	Fetal Intestine Small	intestine
7	chr13:96922600-96926600	Weak transcription	Pancreas	Pancrea
8	chr13:96922800-96923200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr13:96922800-96924000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr13:96923000-96923400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr13:96923000-96923400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr13:96923000-96923400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr13:96923000-96923400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr13:96923000-96924000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr13:96923200-96923400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr13:96923400-96924200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr13:96924200-96926800	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links