Variant report

Variant	nsv976484
Chromosome Location	chr11:25972455-25979070
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 329 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:329 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs557289288	chr11:25972466-25972467	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs138675097	chr11:25972476-25972477	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs77703304	chr11:25972494-25972495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs546345851	chr11:25972496-25972497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs149324267	chr11:25972497-25972498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs573788950	chr11:25972512-25972513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs144578602	chr11:25972527-25972528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs537143575	chr11:25972600-25972601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs553109487	chr11:25972602-25972603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs398045062	chr11:25972630-25972631	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs35791832	chr11:25972631-25972632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs562644183	chr11:25972688-25972689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs184711814	chr11:25972691-25972692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs186967362	chr11:25972721-25972722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs112153076	chr11:25972728-25972729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs114062153	chr11:25972738-25972739	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs191460858	chr11:25972739-25972740	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs549535450	chr11:25972743-25972744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs77916150	chr11:25972753-25972754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs183548009	chr11:25972793-25972794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs531861328	chr11:25972797-25972798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs111994094	chr11:25972831-25972832	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs550300336	chr11:25972848-25972849	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs571854501	chr11:25972896-25972897	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs532805122	chr11:25972899-25972900	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs7101988	chr11:25972972-25972973	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs566157489	chr11:25972973-25972974	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs386751839	chr11:25972976-25972977	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs113215992	chr11:25972977-25972978	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs7102091	chr11:25972978-25972979	Weak transcription ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs567307715	chr11:25972979-25972980	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs189456163	chr11:25972987-25972988	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs556290403	chr11:25972996-25972997	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs577882773	chr11:25973003-25973004	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs545351922	chr11:25973005-25973006	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs532246740	chr11:25973023-25973024	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs554095138	chr11:25973041-25973042	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs144996670	chr11:25973043-25973044	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs543043688	chr11:25973087-25973088	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs561368629	chr11:25973089-25973090	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs182248437	chr11:25973091-25973092	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs112201121	chr11:25973129-25973130	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs565447785	chr11:25973130-25973131	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs532574704	chr11:25973171-25973172	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs147173693	chr11:25973186-25973187	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs185256705	chr11:25973235-25973236	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs12275759	chr11:25973247-25973248	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs140385463	chr11:25973292-25973293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs568233553	chr11:25973296-25973297	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs144863707	chr11:25973362-25973363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	23813976	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:25961000-25972800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:25961600-25972800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:25963200-25979200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:25966200-25974000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:25968800-25972800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:25972800-25973000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:25972800-25973200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:25972800-25973200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:25973000-25973600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:25973200-25979000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:25974000-25974400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:25974400-25989400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:25974600-25975200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr11:25974800-25975200	Enhancers	Fetal Kidney	kidney
15	chr11:25974800-25975600	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr11:25975200-25975600	Weak transcription	Fetal Kidney	kidney
17	chr11:25975600-25975800	Enhancers	Fetal Kidney	kidney
18	chr11:25975800-25982400	Weak transcription	Fetal Kidney	kidney
19	chr11:25979000-25979400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:25979000-25981000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links